ViewGene
Locus Name:
GeneID:
Location:

GeneID:4142
TrivialName: PA14_44500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44500
PAO1 Ortholog Locus:PA1543
Sequence Length:549
Protein Length:182
Start: 3962539
Stop: 3963087
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04932.1|AE004582_10 (AE004582) adenine phosphoribosyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 182/182 (100%), Positives = 182/182 (100%)
Sequence:
ATGATTTTCGACGAGTTCACCCTCAAGTCGCAGATCCGCGCCGTGCCGGACTTTCCCAAGCCCGGCGTGGTG
TTCCGCGACATCACCCCGCTGTTCCAGTCGCCACGCGCGCTGCGCATGACCGTGGACAGCTTCGTCCAGCGC
TACATCGAGGCCGATTTCAGCCACATCGGCGCCATGGATGCCCGCGGCTTCCTCATCGGCTCGGCGGTGGCC
TATGCGCTGAACAAGCCGCTGGTCCTGTTCCGCAAGCAGGGCAAGCTACCCGCCGACGTACTCGCCGAGGGC
TACCAGACCGAATACGGCGAGGCCTTCCTCGAAGTACATGCCGACAGCCTCTGCGAAGGCGACAGCGTACTG
ATCTTCGACGACCTCATCGCCACCGGCGGGACCCTGCTGGCGGCCGCGAGCCTGGTACGACGCCTCGGGGCC
AGGGTCTTCGAGGCCGCGGCGATCATCGACCTGCCGGAACTCGGCGGCTCCACTCGCCTGCAGGACGCCGGC
ATCTCCACCTTCAGTCTCACCGCGTTCGCTCTCGACGAGCGTTGA
Translation:
MIFDEFTLKSQIRAVPDFPKPGVVFRDITPLFQSPRALRMTVDSFVQRYIEADFSHIGAMDARGFLIGSAVA
YALNKPLVLFRKQGKLPADVLAEGYQTEYGEAFLEVHADSLCEGDSVLIFDDLIATGGTLLAAASLVRRLGA
RVFEAAAIIDLPELGGSTRLQDAGISTFSLTAFALDER*
AnnotationID:4149GeneID:4142
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 06:06:47
Gene Name:apt
Confidence Code:2
GeneProduct:adenine phosphoribosyltransferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0503
Secondary Functional Category(ies):
EC Number:2.4.2.7
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAA81130.1| (Z26044) adenine phosphoribosyltransferase [Pseudomonas stutzeri]
          Length = 182

 Score =  293 bits (751), Expect = 3e-79
 Identities = 143/182 (78%), Positives = 163/182 (89%)

>gb|AAO55508.1| (AE016862) adenine phosphoribosyltransferase [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 182

 Score =  291 bits (745), Expect = 1e-78
 Identities = 145/182 (79%), Positives = 160/182 (87%)

>gb|AAN69846.1|AE016623_8 (AE016790) adenine phosphoribosyltransferase [Pseudomonas putida
           KT2440]
          Length = 182

 Score =  290 bits (741), Expect = 4e-78
 Identities = 144/178 (80%), Positives = 158/178 (88%)








 
Structural Features:
COG0503, Apt, Adenine/guanine phosphoribosyltransferases and 
related PRPP-binding proteins 
[Nucleotide transport and metabolism]
CD-Length = 179 residues,  95.5% aligned
Score =  163 bits (414), Expect = 1e-41
Identities = 78/171 (45%), Positives = 101/171 (59%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8286




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25429




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37295




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4142_cdd.html


    		




 
URL:

















    ReferenceID:37934




  
Author/Investigator(s):
        Hershey HV, Taylor MW.





  
Title:
        Nucleotide sequence and deduced amino acid sequence of Escherichia coli adenine phosphoribosyltransferase and comparison with other analogous enzymes.




  
PubMed:
        3527873


MedLine:
        




    
Source:
Gene. 1986;43(3):287-93.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3527873









           
Homologs By Global Alignment 

           

       



     
Gene ID:4142
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6398
                           PA1543_tr
                           translation of PA1543
                           182
                           99.99
                           99.99
                           0
                           908.0
     

     
     
175375
                           gb|AAG04932.1|AE004582_10
                           (AE004582) adenine phosphoribosyltransferase [Pseudomonas aeruginosa PAO1]
                           182
                           99.99
                           99.99
                           0
                           908.0
     

     
     
175376
                           emb|CAA40907.1|
                           (X57736) hypothetical protein [Pseudomonas aeruginosa]
                           182
                           99.99
                           99.99
                           0
                           908.0
     

     
     
175377
                           gb|AAA25714.1|
                           (M98276) analog to the apt gene of E. coli; ORF C; putative [Pseudomonas aeruginosa]
                           182
                           99.99
                           99.99
                           0
                           908.0
     

     
     
175379
                           gb|AAO55508.1|
                           (AE016862) adenine phosphoribosyltransferase [Pseudomonas syringae pv. tomato str. DC3000]
                           182
                           79.67
                           87.91
                           0
                           745.0
     

     






      

          
GC ORFID: 47144How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1543Glimmer Score: 

          
Start: 991370Stop: 990822

          
Length: 549


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1543 translation of PA1543Homolog Bit Score 354.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7538 (ORF: BLASTX 291.0), t_PA1543 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATTTTCGACGAGTTCACCCTCAAGTCGCAGATCCGCGCCGTGCCGGACTTTCCCAAGCCCGGCGTGGTG 
TTCCGCGACATCACCCCGCTGTTCCAGTCGCCACGCGCGCTGCGCATGACCGTGGACAGCTTCGTCCAGCGC 
TACATCGAGGCCGATTTCAGCCACATCGGCGCCATGGATGCCCGCGGCTTCCTCATCGGCTCGGCGGTGGCC 
TATGCGCTGAACAAGCCGCTGGTCCTGTTCCGCAAGCAGGGCAAGCTACCCGCCGACGTACTCGCCGAGGGC 
TACCAGACCGAATACGGCGAGGCCTTCCTCGAAGTACATGCCGACAGCCTCTGCGAAGGCGACAGCGTACTG 
ATCTTCGACGACCTCATCGCCACCGGCGGGACCCTGCTGGCGGCCGCGAGCCTGGTACGACGCCTCGGGGCC 
AGGGTCTTCGAGGCCGCGGCGATCATCGACCTGCCGGAACTCGGCGGCTCCACTCGCCTGCAGGACGCCGGC 
ATCTCCACCTTCAGTCTCACCGCGTTCGCTCTCGACGAGCGTTGA