ViewGene

Locus Name:
GeneID:
Location:

GeneID:4141
TrivialName: PA14_49060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49060
PAO1 Ortholog Locus:PA1189
Sequence Length:498
Protein Length:165
Start: 4357368
Stop: 4357865
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04578.1|AE004549_5 (AE004549) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 164/165 (99%), Positives = 165/165 (100%)
Sequence:
ATGCCCGAACACCTCAACGCCCGCGTCGAGGCCTGCTATCGGCAGGCCGAACACTTCTTCCAACGCAGCTTC
CCCCGCCCGACCGTCAGCTTCCGCCTGCGCGGCCAGAAAGCCGGGGTCGCCCACCTCGACGAGAACCTGCTG
CGCTTCAATCCCCAGCTGTACCGCGAGAATCGCGAGCACTTCCTGGAACAGACCGTGGCCCACGAAGTCGCG
CACCTGATCGCGCACCAGTTGTTCGGCCCGCGCATCCGCCCCCACGGCGAGGAGTGGCAGTTGATCATGCGC
GGCATCTACGGCCTGCCGCCGGACCGCTGCCACACCTACGCGGTCAAGCGCCGCGCCACCACCCGCTACCTG
TACCGCTGCCATTGCCCGGAGCACAACGAGTTCCCGTTCTCCCCGCAACGCCACACCCTGGTGGCCAAGGGG
CGCCGCTACTACTGCCGGCGCTGCAAGGCGACCCTGGTGTTCACCGGCGAAGTGCTCCGCGAGTGA
Translation:
MPEHLNARVEACYRQAEHFFQRSFPRPTVSFRLRGQKAGVAHLDENLLRFNPQLYRENREHFLEQTVAHEVA
HLIAHQLFGPRIRPHGEEWQLIMRGIYGLPPDRCHTYAVKRRATTRYLYRCHCPEHNEFPFSPQRHTLVAKG
RRYYCRRCKATLVFTGEVLRE*
AnnotationID:4148GeneID:4141
AnnotatorUID: diggins
Modification Date/Time: 2005-02-21 15:03:30
Gene Name:
Confidence Code:3
GeneProduct:putative peptidase, SprT family
Cell Localization:()
Synonyms:PA1189
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03926,smart00731
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO55203.1| (AE016861) peptidase, SprT family [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 164

 Score =  253 bits (647), Expect = 2e-67
 Identities = 117/165 (70%), Positives = 138/165 (83%), Gaps = 1/165 (0%)

>gb|AAN67260.1|AE016352_13 (AE016780) sprT protein, putative [Pseudomonas putida KT2440]
          Length = 164

 Score =  253 bits (647), Expect = 2e-67
 Identities = 117/161 (72%), Positives = 136/161 (84%), Gaps = 1/161 (0%)

>gb|AAC22826.1| (U32797) sprt protein (sprT) [Haemophilus influenzae Rd]
          Length = 156

 Score =  134 bits (337), Expect = 2e-31
 Identities = 64/147 (43%), Positives = 93/147 (63%), Gaps = 5/147 (3%)

Structural Features:
pfam03926, DUF335, Putative metallopeptidase (SprT family).
CD-Length = 149 residues, 100.0% aligned
Score =  178 bits (453), Expect = 6e-46
Identities = 73/153 (47%), Positives = 93/153 (60%), Gaps = 4/153 (2%)

smart00731, SprT, SprT homologues. 
Predicted to have roles in transcription elongation.
CD-Length = 146 residues,  99.3% aligned
Score =  111 bits (279), Expect = 8e-26
Identities = 46/155 (29%), Positives = 67/155 (43%), Gaps = 13/155 (8%)
Genomic Context:
Comment:
ReferenceID:8284
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25427
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37577
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4141_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4141

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6397 PA1189_tr translation of PA1189 165 99.39 99.99 0 908.0
175366 gb|AAG04578.1|AE004549_5 (AE004549) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 165 99.39 99.99 0 908.0
175368 gb|AAN67260.1|AE016352_13 (AE016780) sprT protein, putative [Pseudomonas putida KT2440] 165 71.51 83.03 1 649.0
175367 gb|AAO55203.1| (AE016861) peptidase, SprT family [Pseudomonas syringae pv. tomato str. DC3000] 165 70.90 83.63 1 649.0
175369 gb|AAO09960.1|AE016802_3 (AE016802) Uncharacterized protein conserved in bacteria [Vibrio vulnificus CMCP6] 173 41.61 60.69 13 373.0
GC ORFID: 47143How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1189Glimmer Score:
Start: 596540Stop: 596043
Length: 498
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1189 translation of PA1189Homolog Bit Score 354.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene5938 (ORF: BLASTX 259.0), t_PA1189 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCGAACACCTCAACGCCCGCGTCGAGGCCTGCTATCGGCAGGCCGAACACTTCTTCCAACGCAGCTTC
CCCCGCCCGACCGTCAGCTTCCGCCTGCGCGGCCAGAAAGCCGGGGTCGCCCACCTCGACGAGAACCTGCTG
CGCTTCAATCCCCAGCTGTACCGCGAGAATCGCGAGCACTTCCTGGAACAGACCGTGGCCCACGAAGTCGCG
CACCTGATCGCGCACCAGTTGTTCGGCCCGCGCATCCGCCCCCACGGCGAGGAGTGGCAGTTGATCATGCGC
GGCATCTACGGCCTGCCGCCGGACCGCTGCCACACCTACGCGGTCAAGCGCCGCGCCACCACCCGCTACCTG
TACCGCTGCCATTGCCCGGAGCACAACGAGTTCCCGTTCTCCCCGCAACGCCACACCCTGGTGGCCAAGGGG
CGCCGCTACTACTGCCGGCGCTGCAAGGCGACCCTGGTGTTCACCGGCGAAGTGCTCCGCGAGTGA