ViewGene

Locus Name:
GeneID:
Location:

GeneID:4140
TrivialName: PA14_70720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70720
PAO1 Ortholog Locus:PA5357
Sequence Length:537
Protein Length:178
Start: 6297661
Stop: 6298197
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08742.1|AE004947_12 (AE004947) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 174/178 (97%), Positives = 175/178 (98%)
Sequence:
ATGCCCAGCAATGCGCTCTGGCTTCGCGCCGACCAACTGTCCAGCGTCTCCCCCACCGTCCTCGACTGGCTG
TTCGACGAAGGGTCGCTGACCCGGCGCCTGACCGCCCTGGCCGACGGCGCGTTCCGCGTCGAACCCCTGCTG
GAAGGCTGGCAGACCCTGCGCGACGACGAATGCCAGGGGCTCGACGTCCCTCCCGGCAGTAGCGGCTGGGTC
CGCGAGGTCTACCTGCATGGCCACGACCGTCCCTGGGTGTTCGCCCGCAGCGTGGCGGCGCGCAGCGCCCTG
GAAGGCTCGGGCTTCGACCTGGCGCTGCTCGGCACCCGCTCGCTGGGCGAGTTGCTGTTCAGCGACAGCGCC
TTCGAGCGCGGGCCCATCGAAGTCTGCCGCTATCCGGCGGCCGGTCTGCCCGCCGAGGTCCGCGCCGAGGGT
CTCTGGGGCCGTCGCTCACGGTTTTCCCGCGGCGCGCTCGGGGTGCTGGTGGCGGAGGTGTTCCTACCGAGC
CTGTGGGACCAGGCGGGAATCGCCGACGTATAA
Translation:
MPSNALWLRADQLSSVSPTVLDWLFDEGSLTRRLTALADGAFRVEPLLEGWQTLRDDECQGLDVPPGSSGWV
REVYLHGHDRPWVFARSVAARSALEGSGFDLALLGTRSLGELLFSDSAFERGPIEVCRYPAAGLPAEVRAEG
LWGRRSRFSRGALGVLVAEVFLPSLWDQAGIADV*
AnnotationID:4147GeneID:4140
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 19:07:07
Gene Name:ubiC
Confidence Code:2
GeneProduct:chorismate-pyruvate lyase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:4-hydroxybenzoate synthetase
Functional Category Confidence Code:5
COGs:pfam04345,COG3161
Secondary Functional Category(ies):
EC Number:4.-.-.-
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70882.1|AE016732_7 (AE016794) chorismate-pyruvate lyase, putative [Pseudomonas putida
           KT2440]
          Length = 185

 Score =  219 bits (559), Expect = 5e-57
 Identities = 109/168 (64%), Positives = 122/168 (72%), Gaps = 1/168 (0%)

>gb|AAO58894.1| (AE016875) chorismate-pyruvate lyase, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 186

 Score =  204 bits (519), Expect = 2e-52
 Identities = 100/166 (60%), Positives = 118/166 (71%), Gaps = 1/166 (0%)

Structural Features:
pfam04345, Chor_lyase, Chorismate lyase. Chorismate lyase catalyses the 
first step in ubiquinone synthesis, i.e. the removal of pyruvate from chorismate, 
to yield 4-hydroxybenzoate.
CD-Length = 168 residues, 100.0% aligned
Score =  226 bits (578), Expect = 9e-61
Identities = 66/176 (37%), Positives = 89/176 (50%), Gaps = 9/176 (5%)

COG3161, UbiC, 4-hydroxybenzoate synthetase (chorismate lyase) [Coenzyme metabolism]
CD-Length = 174 residues, 100.0% aligned
Score =  149 bits (377), Expect = 2e-37
Identities = 68/177 (38%), Positives = 91/177 (51%), Gaps = 5/177 (2%)
Genomic Context:
Comment:
ReferenceID:8282
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25425
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34742
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4140_cdd.html
URL:
ReferenceID:35679
Author/Investigator(s): Siebert M, Bechthold A, Melzer M, May U, Berger U, Schroder G, Schroder J, Severin K, Heide L
Title: Ubiquinone biosynthesis. Cloning of the genes coding for chorismate pyruvate-lyase and 4-hydroxybenzoate octaprenyl transferase from Escherichia coli.
PubMed: 1644192
MedLine:
Source:
FEBS Lett. 1992 Aug 3;307(3):347-50.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1644192
ReferenceID:35680
Author/Investigator(s): Nichols BP, Green JM.
Title: Cloning and sequencing of Escherichia coli ubiC and purification of chorismate lyase.
PubMed: 1644758
MedLine:
Source:
J Bacteriol. 1992 Aug;174(16):5309-16.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1644758
Homologs By Global Alignment
Gene ID:4140

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6396 PA5357_tr translation of PA5357 178 97.75 98.31 0 911.0
175361 gb|AAG08742.1|AE004947_12 (AE004947) hypothetical protein PA5357 [Pseudomonas aeruginosa PAO1] 178 97.75 98.31 0 911.0
175362 gb|AAN70882.1|AE016732_7 (AE016794) chorismate-pyruvate lyase, putative [Pseudomonas putida KT2440] 185 58.91 67.02 7 550.0
175363 gb|AAO58894.1| (AE016875) chorismate-pyruvate lyase, putative [Pseudomonas syringae pv. tomato str. DC3000] 194 53.09 61.85 24 512.0
175364 gb|AAF01449.1|AF187880_4 (AF187880) unknown [Pseudomonas sp. YH102] 191 42.40 53.92 22 374.0
GC ORFID: 47142How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5357Glimmer Score:
Start: 5561350Stop: 5561886
Length: 537
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA5357 translation of PA5357Homolog Bit Score 355.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene2895 (ORF: BLASTX 206.0), t_PA5357 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCAGCAATGCGCTCTGGCTTCGCGCCGACCAACTGTCCAGCGTCTCCCCCACCGTCCTCGACTGGCTG
TTCGACGAAGGGTCGCTGACCCGGCGCCTGACCGCCCTGGCCGACGGCGCGTTCCGCGTCGAACCCCTGCTG
GAAGGCTGGCAGACCCTGCGCGACGACGAATGCCAGGGGCTCGACGTCCCTCCCGGCAGTAGCGGCTGGGTC
CGCGAGGTCTACCTGCATGGCCACGACCGTCCCTGGGTGTTCGCCCGCAGCGTGGCGGCGCGCAGCGCCCTG
GAAGGCTCGGGCTTCGACCTGGCGCTGCTCGGCACCCGCTCGCTGGGCGAGTTGCTGTTCAGCGACAGCGCC
TTCGAGCGCGGGCCCATCGAAGTCTGCCGCTATCCGGCGGCCGGTCTGCCCGCCGAGGTCCGCGCCGAGGGT
CTCTGGGGCCGTCGCTCACGGTTTTCCCGCGGCGCGCTCGGGGTGCTGGTGGCGGAGGTGTTCCTACCGAGC
CTGTGGGACCAGGCGGGAATCGCCGACGTATAA