ViewGene
Locus Name:
GeneID:
Location:

GeneID:4139
TrivialName: PA14_13380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13380
PAO1 Ortholog Locus:PA3905
Sequence Length:528
Protein Length:175
Start: 1151323
Stop: 1150796
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07292.1|AE004808_2 (AE004808) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 174/175 (99%), Positives = 174/175 (99%)
Sequence:
GTGAGCCGGCTCCAGCCGGCGCTCGCGGCGCCTACGCCGGACAGCCGCCTGTTCGCCCTGGCGGACGGCGCC
CGCTACCTGACCCTGGACACCCGCCTGGAAAAGGCCGCGGGGGAAATCAGCTCGCGCTGGCTGCTGGCCGGG
AGCGAGCTGGACGAAATCGCCCATGCCGGGCCGGTCCTGATCGAATTCATGGACAGCGCCCCGCTTTCGTCA
TCGGGCGAGTTCCTCGGCTGGCTGCGCGACTGGGACCGCCGCTCGCCCATGGCCTCCTGGCTGTGGAGCCGG
GCGTCCTTCGAAAACCTCGCGAAACACTTCGCCGGGCTGCTCTTCACCCGCATGCCCGACGGCCGCCGGGCG
CTGTTGCGCTACTACAGCCCGGAAGTGCGCCGGGCGCTGGAACAGGTCATGACCGCGCGGCAATGGACGCAA
GTGATGGCGCCGCTGGAGCGTTGGCAGGTCTGGCAGCCCCTGCAGGGCGGCTACCTCGTCTATGACCGGGAA
ACGGAGCGGACCGCCGATGCTTGA
Translation:
MSRLQPALAAPTPDSRLFALADGARYLTLDTRLEKAAGEISSRWLLAGSELDEIAHAGPVLIEFMDSAPLSS
SGEFLGWLRDWDRRSPMASWLWSRASFENLAKHFAGLLFTRMPDGRRALLRYYSPEVRRALEQVMTARQWTQ
VMAPLERWQVWQPLQGGYLVYDRETERTADA*
AnnotationID:4146GeneID:4139
AnnotatorUID: urbach
Modification Date/Time: 2004-03-10 18:06:15
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15032




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25423




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4139
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6395
                           PA3905_tr
                           translation of PA3905
                           175
                           99.42
                           99.42
                           0
                           911.0
     

     
     
175360
                           gb|AAG07292.1|AE004808_2
                           (AE004808) hypothetical protein PA3905 [Pseudomonas aeruginosa PAO1]
                           175
                           98.85
                           99.42
                           0
                           908.0
     

     






      

          
GC ORFID: 47141How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3905Glimmer Score: 

          
Start: 3802615Stop: 3803142

          
Length: 528


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3905 translation of PA3905Homolog Bit Score 355.0

          
Other Homologs:  t_PA3905 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGCCGGCTCCAGCCGGCGCTCGCGGCGCCTACGCCGGACAGCCGCCTGTTCGCCCTGGCGGACGGCGCC 
CGCTACCTGACCCTGGACACCCGCCTGGAAAAGGCCGCGGGGGAAATCAGCTCGCGCTGGCTGCTGGCCGGG 
AGCGAGCTGGACGAAATCGCCCATGCCGGGCCGGTCCTGATCGAATTCATGGACAGCGCCCCGCTTTCGTCA 
TCGGGCGAGTTCCTCGGCTGGCTGCGCGACTGGGACCGCCGCTCGCCCATGGCCTCCTGGCTGTGGAGCCGG 
GCGTCCTTCGAAAACCTCGCGAAACACTTCGCCGGGCTGCTCTTCACCCGCATGCCCGACGGCCGCCGGGCG 
CTGTTGCGCTACTACAGCCCGGAAGTGCGCCGGGCGCTGGAACAGGTCATGACCGCGCGGCAATGGACGCAA 
GTGATGGCGCCGCTGGAGCGTTGGCAGGTCTGGCAGCCCCTGCAGGGCGGCTACCTCGTCTATGACCGGGAA 
ACGGAGCGGACCGCCGATGCTTGA