ViewGene
Locus Name:
GeneID:
Location:

GeneID:4138
TrivialName: PA14_15870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15870
PAO1 Ortholog Locus:PA3753
Sequence Length:525
Protein Length:174
Start: 1352746
Stop: 1353270
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07140.1|AE004794_5 (AE004794) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 174/174 (100%), Positives = 174/174 (100%)
Sequence:
ATGAAATACCGCCTGGGCGATGCCCGCGTCGAAACCCATCCCGACAGCTGGATCGCGCCCAGCGCAGCGGTG
ATCGGCAAGGTTCGCCTGGATGCCGGCGCCAGCGTCTGGTTTGGCGCGGTGCTGCGCGGCGACAACGAGCTG
ATCCATATCGGCGAGCACAGCAACGTCCAGGACGGCTCGGTGATGCACACCGACATGGGCTATCCGCTGACC
CTCGGCAAGGGCGTCACCGTCGGCCACAACGCCATGCTGCATGGTTGCAGCGTGGGCGACTACAGCCTGGTG
GGGATCAACGCGGTGATCCTCAATGGGGCGAAGATCGGCAAGTACTGCATCATCGGCGCCAACGCGCTGATT
CCCGAGGGCAAGGAGATTCCCGACGGCTCGCTGGTGATGGGCTCGCCGGGCAAGGTAGTGCGCGAGCTGAGC
GAGCCGCAGAAGAAGATGCTCGAGGCCAGCGCCGCCCACTATGTGCACAATGCCCGCCGTTACGCCCGCGAC
CTCGTCGAGGACCCGGCGTGA
Translation:
MKYRLGDARVETHPDSWIAPSAAVIGKVRLDAGASVWFGAVLRGDNELIHIGEHSNVQDGSVMHTDMGYPLT
LGKGVTVGHNAMLHGCSVGDYSLVGINAVILNGAKIGKYCIIGANALIPEGKEIPDGSLVMGSPGKVVRELS
EPQKKMLEASAAHYVHNARRYARDLVEDPA*
AnnotationID:4145GeneID:4138
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 11:11:03
Gene Name:
Confidence Code:3
GeneProduct:putative acetyltransferase
Cell Localization:()
Synonyms:PA3753
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0663
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67076.1|AE016336_8 (AE016779) anhydrase, family 3 protein [Pseudomonas putida KT2440]
          Length = 174

 Score =  300 bits (767), Expect = 3e-81
 Identities = 147/172 (85%), Positives = 159/172 (92%)

>gb|AAO54986.1| (AE016861) bacterial transferase, hexapeptide repeat protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 174

 Score =  295 bits (755), Expect = 8e-80
 Identities = 141/169 (83%), Positives = 157/169 (92%)

>dbj|BAB47820.1| (AP002994) ferripyochelin binding protein-like [Mesorhizobium loti]
          Length = 175

 Score =  189 bits (480), Expect = 6e-48
 Identities = 84/154 (54%), Positives = 114/154 (74%)






 
Structural Features:
COG0663, PaaY, Carbonic anhydrases/acetyltransferases, 
isoleucine patch superfamily 
CD-Length = 176 residues,  90.3% aligned
Score =  216 bits (552), Expect = 2e-57
Identities = 86/159 (54%), Positives = 112/159 (70%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8278




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25421




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31805




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4138_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4138
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6393
                           PA3753_tr
                           translation of PA3753
                           174
                           99.99
                           99.99
                           0
                           910.0
     

     
     
175275
                           gb|AAG07140.1|AE004794_5
                           (AE004794) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           174
                           99.99
                           99.99
                           0
                           910.0
     

     
     
175276
                           gb|AAB88579.1|
                           (M82832) unknown [Pseudomonas aeruginosa]
                           174
                           99.42
                           99.42
                           0
                           905.0
     

     
     
175277
                           gb|AAN67076.1|AE016336_8
                           (AE016779) anhydrase, family 3 protein [Pseudomonas putida KT2440]
                           174
                           84.48
                           91.37
                           0
                           765.0
     

     
     
175278
                           gb|AAO54986.1|
                           (AE016861) bacterial transferase, hexapeptide repeat protein [Pseudomonas syringae pv. tomato str. DC3000]
                           176
                           81.25
                           90.34
                           4
                           755.0
     

     






      

          
GC ORFID: 47140How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3753Glimmer Score: 

          
Start: 3601191Stop: 3600667

          
Length: 525


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3753 translation of PA3753Homolog Bit Score 355.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4552 (ORF: BLASTX 294.0), t_PA0066 (ORF: BLASTX 128.0), t_PA3753 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAATACCGCCTGGGCGATGCCCGCGTCGAAACCCATCCCGACAGCTGGATCGCGCCCAGCGCAGCGGTG 
ATCGGCAAGGTTCGCCTGGATGCCGGCGCCAGCGTCTGGTTTGGCGCGGTGCTGCGCGGCGACAACGAGCTG 
ATCCATATCGGCGAGCACAGCAACGTCCAGGACGGCTCGGTGATGCACACCGACATGGGCTATCCGCTGACC 
CTCGGCAAGGGCGTCACCGTCGGCCACAACGCCATGCTGCATGGTTGCAGCGTGGGCGACTACAGCCTGGTG 
GGGATCAACGCGGTGATCCTCAATGGGGCGAAGATCGGCAAGTACTGCATCATCGGCGCCAACGCGCTGATT 
CCCGAGGGCAAGGAGATTCCCGACGGCTCGCTGGTGATGGGCTCGCCGGGCAAGGTAGTGCGCGAGCTGAGC 
GAGCCGCAGAAGAAGATGCTCGAGGCCAGCGCCGCCCACTATGTGCACAATGCCCGCCGTTACGCCCGCGAC 
CTCGTCGAGGACCCGGCGTGA