ViewGene
Locus Name:
GeneID:
Location:

GeneID:4136
TrivialName: PA14_30030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30030
PAO1 Ortholog Locus:PA2636
Sequence Length:555
Protein Length:184
Start: 2600281
Stop: 2599727
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06024.1|AE004692_3 (AE004692) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 182/184 (98%), Positives = 183/184 (99%)
Sequence:
GTGGAATGCAGGCTCCCCTCTCTATGGAAGGACGCCAGCATGCCCAAGCGCAATCGTCTCAGCCGCGCCGTC
GGCGCCATCAACCTCCTCCCCCGCCGCCTGCGCAGCCGCAGCCTGACGCTGCTGCTGGGCTCCCAGGTGCGC
TTCGCCGGCACGGCGAGGGTGCGCATCCATGAACTGGGGCAGGAGCGCGCCATCCTCAGCCTGAAGAACCGT
CGACCGGTGCAGAACCACATAAAAGGTATCCATGCCGCAGCGATGGCCTTGCTCGCCGAGTCGGCCAGCGGC
TTCCTGGTCGGAATGAACGTACCGGACGACAAGCTGCCGCTGATCAAGACCATGAAGATCGACTATCTCAAG
CGCGCCCAGGGCGACCTGACCGCCATCGCGACGCTGGAGGCCGGACAGATCGAGCAGATCCGGCAACAGGAC
AAGGGCGAGGTCCGCGTGGCGGTGCTGGTCAGCGACGAGAACGGCAACCAGCCGATCGCCTGCGAGATGGTC
TGGGCCTGGGTCGGCAAGAAACCCCGGGACGCTACCGCAGCCCCTAGGTAG
Translation:
MECRLPSLWKDASMPKRNRLSRAVGAINLLPRRLRSRSLTLLLGSQVRFAGTARVRIHELGQERAILSLKNR
RPVQNHIKGIHAAAMALLAESASGFLVGMNVPDDKLPLIKTMKIDYLKRAQGDLTAIATLEAGQIEQIRQQD
KGEVRVAVLVSDENGNQPIACEMVWAWVGKKPRDATAAPR*
AnnotationID:4143GeneID:4136
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 14:02:21
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2636
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15030




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25417




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33200




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4136_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4136
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6391
                           PA2636_tr
                           translation of PA2636
                           184
                           98.91
                           99.45
                           0
                           912.0
     

     
     
175256
                           gb|AAG06024.1|AE004692_3
                           (AE004692) hypothetical protein PA2636 [Pseudomonas aeruginosa PAO1]
                           184
                           98.36
                           99.45
                           0
                           909.0
     

     
     
175257
                           gb|AAQ60157.1|
                           (AE016918) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           184
                           46.73
                           67.39
                           14
                           455.0
     

     






      

          
GC ORFID: 47138How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2636Glimmer Score: 

          
Start: 2353645Stop: 2354199

          
Length: 555


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2636 translation of PA2636Homolog Bit Score 355.0

          
Other Homologs:  t_PA2636 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGAATGCAGGCTCCCCTCTCTATGGAAGGACGCCAGCATGCCCAAGCGCAATCGTCTCAGCCGCGCCGTC 
GGCGCCATCAACCTCCTCCCCCGCCGCCTGCGCAGCCGCAGCCTGACGCTGCTGCTGGGCTCCCAGGTGCGC 
TTCGCCGGCACGGCGAGGGTGCGCATCCATGAACTGGGGCAGGAGCGCGCCATCCTCAGCCTGAAGAACCGT 
CGACCGGTGCAGAACCACATAAAAGGTATCCATGCCGCAGCGATGGCCTTGCTCGCCGAGTCGGCCAGCGGC 
TTCCTGGTCGGAATGAACGTACCGGACGACAAGCTGCCGCTGATCAAGACCATGAAGATCGACTATCTCAAG 
CGCGCCCAGGGCGACCTGACCGCCATCGCGACGCTGGAGGCCGGACAGATCGAGCAGATCCGGCAACAGGAC 
AAGGGCGAGGTCCGCGTGGCGGTGCTGGTCAGCGACGAGAACGGCAACCAGCCGATCGCCTGCGAGATGGTC 
TGGGCCTGGGTCGGCAAGAAACCCCGGGACGCTACCGCAGCCCCTAGGTAG