ViewGene

Locus Name:
GeneID:
Location:

GeneID:4135
TrivialName: PA14_34180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34180
PAO1 Ortholog Locus:PA2357
Sequence Length:561
Protein Length:186
Start: 3039326
Stop: 3039886
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05745.1|AE004661_12 (AE004661) NADH-dependent FMN reductase MsuE [Pseudomonas aeruginosa PAO1]
Identities = 186/186 (100%), Positives = 186/186 (100%)
Sequence:
ATGACCAGCCCCTTCAAAGTCGTCGCCGTCTCCGGCGGCACCTATCGCCCGTCCCGCACCCTGGTACTCACC
CAGGCCCTGATCGCCGAGCTTGGCCAGTCGCTGCCGATCGACAGCCGGGTCATCGAGCTGACCGACATCGCC
GCGCCGCTGGGCGCTACCCTGGCGCGCAACCAGGCGCCGGCGGAACTGCAGGCGGTGCTCGACGAGATCGAA
AGCGCCGACCTGCTGCTGGTCGCCTCGCCGGTCTACCGTGGCTCCTATCCGGGCCTGCTCAAGCACCTGTTC
GACCTGATCGACCTCAACGCCTTGATCGACACCCCGGTGCTGCTCGCCGCCACTGGCGGCACCGAGCGCCAC
GCGCTGGTCCTCGACCACCAGTTGCGCCCGCTGTTCAGCTTCTTCCAGGCGATCACCCTGCCCATCGGGGTC
TACGCCAGCGAGGCCGACTTCGACAACTACCGGATCGTCAGCGAGCCGCTGAAGGCGCGCATCCGCCTCGCC
GCCGAGCGCGCCGCGCCGCTGTTCGGCGGACGCTCCGAACTGTTGAAGATCGCCTGA
Translation:
MTSPFKVVAVSGGTYRPSRTLVLTQALIAELGQSLPIDSRVIELTDIAAPLGATLARNQAPAELQAVLDEIE
SADLLLVASPVYRGSYPGLLKHLFDLIDLNALIDTPVLLAATGGTERHALVLDHQLRPLFSFFQAITLPIGV
YASEADFDNYRIVSEPLKARIRLAAERAAPLFGGRSELLKIA*
AnnotationID:4142GeneID:4135
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 07:07:58
Gene Name:msuE
Confidence Code:1
GeneProduct:NADH-dependent FMN reductase
Cell Localization:()
Synonyms:slfA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0431
Secondary Functional Category(ies):carbon compound catabolism
EC Number:1.5.1.29
Status:ACTIVE
Pathway:
Homology:
>gb|AAM35739.1| (AE011717) NADH-dependent FMN reductase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 187

 Score =  242 bits (617), Expect = 9e-64
 Identities = 124/187 (66%), Positives = 150/187 (80%), Gaps = 1/187 (0%)

>dbj|BAC66051.1| (AB091764) NADH-dependent FMN reductase [Pseudomonas putida]
          Length = 186

 Score =  226 bits (576), Expect = 5e-59
 Identities = 117/186 (62%), Positives = 144/186 (77%)

>gb|AAM35226.1| (AE011659) NADH-dependent FMN reductase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 195

 Score =  189 bits (481), Expect = 6e-48
 Identities = 93/172 (54%), Positives = 124/172 (72%)

Structural Features:
COG0431, COG0431, Predicted flavoprotein 
CD-Length = 184 residues,  96.2% aligned
Score =  110 bits (277), Expect = 9e-26
Identities = 57/179 (31%), Positives = 83/179 (46%), Gaps = 7/179 (3%)
Genomic Context:
Comment:
ReferenceID:8272
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25415
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32905
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4135_cdd.html
URL:
ReferenceID:34481
Author/Investigator(s): Kertesz MA, Schmidt-Larbig K, Wuest T.
Title: A novel reduced flavin mononucleotide-dependent methanesulfonate sulfonatase encoded by the sulfur-regulated msu operon of Pseudomonas aeruginosa.
PubMed: 10049377
MedLine:
Source:
J Bacteriol. 1999 Mar;181(5):1464-73.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10049377
Homologs By Global Alignment
Gene ID:4135

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6390 PA2357_tr translation of PA2357 186 99.99 99.99 0 912.0
175244 gb|AAG05745.1|AE004661_12 (AE004661) NADH-dependent FMN reductase MsuE [Pseudomonas aeruginosa PAO1] 186 99.99 99.99 0 912.0
175245 gb|AAB82563.1| (AF026067) NADH-dependent FMN reductase [Pseudomonas aeruginosa] 186 99.99 99.99 0 912.0
175246 gb|AAM35739.1| (AE011717) NADH-dependent FMN reductase [Xanthomonas axonopodis pv. citri str. 306] 187 66.31 80.21 1 619.0
175247 dbj|BAC66051.1| (AB091764) NADH-dependent FMN reductase [Pseudomonas putida] 186 62.90 77.41 0 576.0
GC ORFID: 47137How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2357Glimmer Score:
Start: 1914590Stop: 1914030
Length: 561
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2357 translation of PA2357Homolog Bit Score 355.0
Other Homologs: t_PA2357 (ORF: GLIMMER)
GC ORF Sequence
ATGACCAGCCCCTTCAAAGTCGTCGCCGTCTCCGGCGGCACCTATCGCCCGTCCCGCACCCTGGTACTCACC
CAGGCCCTGATCGCCGAGCTTGGCCAGTCGCTGCCGATCGACAGCCGGGTCATCGAGCTGACCGACATCGCC
GCGCCGCTGGGCGCTACCCTGGCGCGCAACCAGGCGCCGGCGGAACTGCAGGCGGTGCTCGACGAGATCGAA
AGCGCCGACCTGCTGCTGGTCGCCTCGCCGGTCTACCGTGGCTCCTATCCGGGCCTGCTCAAGCACCTGTTC
GACCTGATCGACCTCAACGCCTTGATCGACACCCCGGTGCTGCTCGCCGCCACTGGCGGCACCGAGCGCCAC
GCGCTGGTCCTCGACCACCAGTTGCGCCCGCTGTTCAGCTTCTTCCAGGCGATCACCCTGCCCATCGGGGTC
TACGCCAGCGAGGCCGACTTCGACAACTACCGGATCGTCAGCGAGCCGCTGAAGGCGCGCATCCGCCTCGCC
GCCGAGCGCGCCGCGCCGCTGTTCGGCGGACGCTCCGAACTGTTGAAGATCGCCTGA