ViewGene
Locus Name:
GeneID:
Location:

GeneID:4134
TrivialName: PA14_37060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37060
PAO1 Ortholog Locus:PA2128
Sequence Length:552
Protein Length:183
Start: 3300902
Stop: 3300351
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05516.1|AE004640_5 (AE004640) fimbrial subunit CupA1 [Pseudomonas aeruginosa PAO1]
Identities = 182/183 (99%), Positives = 182/183 (99%)
Sequence:
ATGACCAGAACTTCGAACCCATGCGCAGTGGTATTGGCCTTTGCGGCAATTGCCGCTTCGGGAACCGCGATG
GCGGCAAACACTATCACATTCAGCGGCGAAGTGACCGACCAGACCTGCCAGGTCGCGGTCAACGGCTTCACC
GACCCCACGGTGATCCTCGACAGCGTACCGGTGAGCGCCCTCGATGGCGCAGTGGGCCGCAGCGCCGGCGAA
ACCGCCTTCACCCTGCAACTCACCGATTGCGTCGCGCCGACGGCCGACGAGCATTTCACCACCCTGTTCCAG
GCCACCAACCCCAGCGCCGCCGGGAACCTGGTGAACACCGCCGCCAGCGGCGCGACGGGCGTGGCGCTGCAA
TTGCTCGATAGCGTCGGCGGCAACCCGGTCGACCTGGCCGGCGGCGCGGCGGTGCCCGCCGGCGATATCGTG
CTCGCCAACGGAGCCACCAGCACCAGCTACGACTACGCGGTGCAGTACGTCTCCGAAGCGGCGACCGTGACG
CCCGGTCCGGTACTCGGCGCCGTGACCTACACGTTGCGTTACGAGTGA
Translation:
MTRTSNPCAVVLAFAAIAASGTAMAANTITFSGEVTDQTCQVAVNGFTDPTVILDSVPVSALDGAVGRSAGE
TAFTLQLTDCVAPTADEHFTTLFQATNPSAAGNLVNTAASGATGVALQLLDSVGGNPVDLAGGAAVPAGDIV
LANGATSTSYDYAVQYVSEAATVTPGPVLGAVTYTLRYE*
AnnotationID:4141GeneID:4134
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 10:10:02
Gene Name:cupA1
Confidence Code:1
GeneProduct:fimbrial subunit CupA1
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00419,COG3539
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAG55653.1|AE005303_9 (AE005303) putative pilin subunit [Escherichia coli O157:H7 EDL933]
          Length = 186

 Score =  116 bits (290), Expect = 8e-26
 Identities = 72/176 (40%), Positives = 103/176 (58%), Gaps = 10/176 (5%)

>gb|AAM83942.1|AE013635_7 (AE013635) fimbrial protein (precursor) [Yersinia pestis KIM]
          Length = 176

 Score =  108 bits (271), Expect = 1e-23
 Identities = 78/178 (43%), Positives = 104/178 (58%), Gaps = 11/178 (6%)








 
Structural Features:
pfam00419, Fimbrial, Fimbrial protein.
CD-Length = 151 residues,  99.3% aligned
Score = 67.2 bits (164), Expect = 1e-12
Identities = 50/157 (31%), Positives = 71/157 (45%), Gaps = 8/157 (5%)

COG3539, FimA, P pilus assembly protein, pilin FimA 
CD-Length = 184 residues,  95.1% aligned
Score = 66.7 bits (162), Expect = 1e-12
[Cell motility and secretion / Intracellular trafficking and secretion]
Identities = 52/177 (29%), Positives = 70/177 (39%), Gaps = 4/177 (2%)








   
Genomic Context:






   
Comment:


















    ReferenceID:8270




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25413




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32595




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4134_cdd.html


    		




 
URL:

















    ReferenceID:32673




  
Author/Investigator(s):
        Vallet I, Olson JW, Lory S, Lazdunski A, Filloux A.





  
Title:
        The chaperone/usher pathways of Pseudomonas aeruginosa: Identification of fimbrial gene clusters (cup) and their involvement in biofilm formation




  
PubMed:
        11381121


MedLine:
        




    
Source:
Proc Natl Acad Sci U S A. 2001 Jun 5;98(12):6911-6. Epub 2001 May 29






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=11381121









           
Homologs By Global Alignment 

           

       



     
Gene ID:4134
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6389
                           PA2128_tr
                           translation of PA2128
                           183
                           99.45
                           99.45
                           0
                           911.0
     

     
     
175235
                           gb|AAG05516.1|AE004640_5
                           (AE004640) fimbrial subunit CupA1 [Pseudomonas aeruginosa PAO1]
                           183
                           99.45
                           99.45
                           0
                           911.0
     

     
     
175236
                           gb|AAP84171.1|
                           (AY273869) putative fimbrial protein precursor [Pseudomonas aeruginosa]
                           186
                           69.89
                           80.10
                           7
                           644.0
     

     
     
175240
                           emb|CAC93344.1|
                           (AJ414159) putative fimbrial protein [Yersinia pestis CO92]
                           188
                           41.48
                           55.31
                           17
                           279.0
     

     
     
175239
                           gb|AAM83942.1|AE013635_7
                           (AE013635) fimbrial protein (precursor) [Yersinia pestis KIM]
                           188
                           41.48
                           55.31
                           17
                           279.0
     

     






      

          
GC ORFID: 47136How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2128Glimmer Score: 

          
Start: 1653012Stop: 1653563

          
Length: 552


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2128 translation of PA2128Homolog Bit Score 355.0

          
Other Homologs:  t_RL044 (ORF: BLASTX 251.0), t_PA2128 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCAGAACTTCGAACCCATGCGCAGTGGTATTGGCCTTTGCGGCAATTGCCGCTTCGGGAACCGCGATG 
GCGGCAAACACTATCACATTCAGCGGCGAAGTGACCGACCAGACCTGCCAGGTCGCGGTCAACGGCTTCACC 
GACCCCACGGTGATCCTCGACAGCGTACCGGTGAGCGCCCTCGATGGCGCAGTGGGCCGCAGCGCCGGCGAA 
ACCGCCTTCACCCTGCAACTCACCGATTGCGTCGCGCCGACGGCCGACGAGCATTTCACCACCCTGTTCCAG 
GCCACCAACCCCAGCGCCGCCGGGAACCTGGTGAACACCGCCGCCAGCGGCGCGACGGGCGTGGCGCTGCAA 
TTGCTCGATAGCGTCGGCGGCAACCCGGTCGACCTGGCCGGCGGCGCGGCGGTGCCCGCCGGCGATATCGTG 
CTCGCCAACGGAGCCACCAGCACCAGCTACGACTACGCGGTGCAGTACGTCTCCGAAGCGGCGACCGTGACG 
CCCGGTCCGGTACTCGGCGCCGTGACCTACACGTTGCGTTACGAGTGA