ViewGene
Locus Name:
GeneID:
Location:

GeneID:4133
TrivialName: PA14_39210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39210
PAO1 Ortholog Locus:PA1957
Sequence Length:528
Protein Length:175
Start: 3491891
Stop: 3492418
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05345.1|AE004622_7 (AE004622) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 171/175 (97%), Positives = 172/175 (98%)
Sequence:
ATGAAGGTGCTGGTACTCACCGGGCCcgAATCcAGCGGCAAGAGCTGGCTTGCGGAGCAGCTCCAGGCCCGC
TTCGGCGGCCGGGTGGTCGGCGAGTACGTCCGCCACTTCATCGACGAACAGCGCCGCGACACCTGCTACGCC
GACATCCCCGCCATCGCCCGCGGGCAACTGGCCTGGGAGGATGCCGCCCGCGCGGAGCGGCCGGCGCTGCTG
ATCCTCGATACCCACCTGCTGAGCAACATCCTCTGGAGCCGGATTCTCTTCGGCGCCTGCCCGGACTGGCTC
GAACCCGCCCTGCTGCGGCGGCGCTACGACCTGCACCTGCTGCTCTCGCCGGAGGGCGTAGCCTGGATCGCC
GACGGCCAGCGCTGCCAGCCGGAACTGGCGCAGCGCCAGGCATTCCATCGCGAATGCCATGCCTGGCTGGAG
CGGCATCGGCAGCCCTACCGCGCCATCGCCGGCGACTGGGCCGAGCGCCGGCGCCAGGCTTTCGCCGCAGTG
CAAGGGCTGCTCCGGGACGGCTGA
Translation:
MKVLVLTGPESSGKSWLAEQLQARFGGRVVGEYVRHFIDEQRRDTCYADIPAIARGQLAWEDAARAERPALL
ILDTHLLSNILWSRILFGACPDWLEPALLRRRYDLHLLLSPEGVAWIADGQRCQPELAQRQAFHRECHAWLE
RHRQPYRAIAGDWAERRRQAFAAVQGLLRDG*
AnnotationID:4140GeneID:4133
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 15:03:16
Gene Name:
Confidence Code:3
GeneProduct:putative ATPase/kinase
Cell Localization:()
Synonyms:nadR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3172
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56630.1| (AE016867) nicotinamide-nucleotide adenylyltransferase, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 178

 Score =  255 bits (651), Expect = 9e-68
 Identities = 122/172 (70%), Positives = 136/172 (79%)








 
Structural Features:
COG3172, NadR, Predicted ATPase/kinase involved in NAD metabolism 
[Coenzyme metabolism]
CD-Length = 187 residues,  95.2% aligned
Score =  212 bits (542), Expect = 2e-56
Identities = 61/179 (34%), Positives = 84/179 (46%), Gaps = 5/179 (2%)








   
Genomic Context:






   
Comment:


















    ReferenceID:8268




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25411




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32764




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4133_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4133
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6388
                           PA1957_tr
                           translation of PA1957
                           175
                           97.71
                           98.28
                           0
                           912.0
     

     
     
175232
                           gb|AAG05345.1|AE004622_7
                           (AE004622) hypothetical protein PA1957 [Pseudomonas aeruginosa PAO1]
                           175
                           97.71
                           98.28
                           0
                           912.0
     

     
     
175234
                           gb|AAO56630.1|
                           (AE016867) nicotinamide-nucleotide adenylyltransferase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           178
                           68.53
                           76.40
                           3
                           650.0
     

     
     
175233
                           gb|AAN68467.1|AE016479_7
                           (AE016784) conserved hypothetical protein [Pseudomonas putida KT2440]
                           189
                           64.55
                           73.01
                           14
                           653.0
     

     






      

          
GC ORFID: 47135How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1957Glimmer Score: 

          
Start: 1462020Stop: 1461493

          
Length: 528


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1957 translation of PA1957Homolog Bit Score 355.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7231 (ORF: BLASTX 259.0), t_PA1957 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGGTGCTGGTACTCACCGGGCCcgAATCcAGCGGCAAGAGCTGGCTTGCGGAGCAGCTCCAGGCCCGC 
TTCGGCGGCCGGGTGGTCGGCGAGTACGTCCGCCACTTCATCGACGAACAGCGCCGCGACACCTGCTACGCC 
GACATCCCCGCCATCGCCCGCGGGCAACTGGCCTGGGAGGATGCCGCCCGCGCGGAGCGGCCGGCGCTGCTG 
ATCCTCGATACCCACCTGCTGAGCAACATCCTCTGGAGCCGGATTCTCTTCGGCGCCTGCCCGGACTGGCTC 
GAACCCGCCCTGCTGCGGCGGCGCTACGACCTGCACCTGCTGCTCTCGCCGGAGGGCGTAGCCTGGATCGCC 
GACGGCCAGCGCTGCCAGCCGGAACTGGCGCAGCGCCAGGCATTCCATCGCGAATGCCATGCCTGGCTGGAG 
CGGCATCGGCAGCCCTACCGCGCCATCGCCGGCGACTGGGCCGAGCGCCGGCGCCAGGCTTTCGCCGCAGTG 
CAAGGGCTGCTCCGGGACGGCTGA