ViewGene
Locus Name:
GeneID:
Location:

GeneID:4132
TrivialName: PA14_43680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43680
PAO1 Ortholog Locus:PA1610
Sequence Length:516
Protein Length:171
Start: 3890090
Stop: 3890605
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04999.1|AE004589_2 (AE004589) beta-hydroxydecanoyl-ACP dehydrase [Pseudomonas aeruginosa PAO1]
Identities = 171/171 (100%), Positives = 171/171 (100%)
Sequence:
ATGACCAAACAACACGCCTTCACCCGAGAAGACCTGCTGCGCTGCAGTCGCGGCGAGCTGTTCGGCCCGGGT
AACGCGCAACTTCCCGCCCCCAACATGCTGATGATCGATCGCATCGTTCACATCAGCGATGTCGGCGGCAAG
TATGGCAAGGGCGAGCTGGTCGCCGAGCTGGATATCAACCCGGACCTGTGGTTCTTCGCCTGTCACTTCGAA
GGCGATCCGGTCATGCCCGGTTGCCTGGGCCTGGATGCCATGTGGCAGTTGGTCGGTTTCTACCTCGGCTGG
CAGGGCAACCCCGGCCGCGGCCGCGCCCTGGGTTCGGGCGAAGTGAAGTTCTTCGGTCAGGTTCTGCCGACA
GCGAAGAAGGTCACGTATAACATTCATATCAAGCGCACGATCAATCGTTCGCTGGTCCTGGCCATCGCCGAC
GGCACCGTCAGCGTCGATGGCCGCGAAATCTACAGTGCCGAAGGCCTCCGCGTCGGCCTGTTCACCTCCACT
GACAGCTTCTAA
Translation:
MTKQHAFTREDLLRCSRGELFGPGNAQLPAPNMLMIDRIVHISDVGGKYGKGELVAELDINPDLWFFACHFE
GDPVMPGCLGLDAMWQLVGFYLGWQGNPGRGRALGSGEVKFFGQVLPTAKKVTYNIHIKRTINRSLVLAIAD
GTVSVDGREIYSAEGLRVGLFTSTDSF*
AnnotationID:4139GeneID:4132
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 07:07:04
Gene Name:fabA
Confidence Code:1
GeneProduct:beta-hydroxydecanoyl-ACP dehydrase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:3-hydroxydecanoyl-(acyl-carrier-protein) dehydratase
Functional Category Confidence Code:5
COGs:COG0764
Secondary Functional Category(ies):
EC Number:4.2.1.60
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55727.1| (AE016863) beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 171

 Score =  333 bits (853), Expect = 3e-91
 Identities = 158/171 (92%), Positives = 165/171 (96%)

>gb|AAN69755.1|AE016612_1 (AE016789) 3-hydroxydecanoyl-(acyl-carrier-protein) dehydratase
           [Pseudomonas putida KT2440]
          Length = 171

 Score =  324 bits (831), Expect = 1e-88
 Identities = 153/171 (89%), Positives = 162/171 (94%)

>gb|AAO10977.1|AE016805_234 (AE016805) 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier
           protein) dehydratase [Vibrio vulnificus CMCP6]
          Length = 172

 Score =  254 bits (649), Expect = 2e-67
 Identities = 117/169 (69%), Positives = 139/169 (82%)






 
Structural Features:
COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) 
dehydratases [Lipid metabolism]
CD-Length = 147 residues, 100.0% aligned
Score =  138 bits (348), Expect = 4e-34
Identities = 51/158 (32%), Positives = 73/158 (46%), Gaps = 13/158 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8266




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25409




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36510




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4132_cdd.html


    		




 
URL:

















    ReferenceID:36578




  
Author/Investigator(s):
        Hoang TT, Schweizer HP.





  
Title:
        Fatty acid biosynthesis in Pseudomonas aeruginosa: cloning and characterization of the fabAB operon encoding beta-hydroxyacyl-acyl carrier protein dehydratase (FabA) and beta-ketoacyl-acyl carrier protein synthase I (FabB).




  
PubMed:
        9286984


MedLine:
        




    
Source:
J Bacteriol. 1997 Sep;179(17):5326-32.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=9286984









           
Homologs By Global Alignment 

           

       



     
Gene ID:4132
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6387
                           PA1610_tr
                           translation of PA1610
                           171
                           99.99
                           99.99
                           0
                           911.0
     

     
     
175186
                           gb|AAG04999.1|AE004589_2
                           (AE004589) beta-hydroxydecanoyl-ACP dehydrase [Pseudomonas aeruginosa PAO1]
                           171
                           99.99
                           99.99
                           0
                           911.0
     

     
     
175187
                           gb|AAC45619.1|
                           (U70470) beta-hydroxydecanoyl-ACP dehydrase [Pseudomonas aeruginosa]
                           171
                           99.99
                           99.99
                           0
                           911.0
     

     
     
175188
                           gb|AAO55727.1|
                           (AE016863) beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA [Pseudomonas syringae pv. tomato str. DC3000]
                           171
                           92.39
                           96.49
                           0
                           853.0
     

     
     
175189
                           gb|AAN69755.1|AE016612_1
                           (AE016789) 3-hydroxydecanoyl-(acyl-carrier-protein) dehydratase [Pseudomonas putida KT2440]
                           171
                           89.47
                           94.73
                           0
                           831.0
     

     






      

          
GC ORFID: 47134How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1610Glimmer Score: 

          
Start: 1063819Stop: 1063304

          
Length: 516


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1610 translation of PA1610Homolog Bit Score 355.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene426 (ORF: BLASTX 331.0), t_PA1610 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCAAACAACACGCCTTCACCCGAGAAGACCTGCTGCGCTGCAGTCGCGGCGAGCTGTTCGGCCCGGGT 
AACGCGCAACTTCCCGCCCCCAACATGCTGATGATCGATCGCATCGTTCACATCAGCGATGTCGGCGGCAAG 
TATGGCAAGGGCGAGCTGGTCGCCGAGCTGGATATCAACCCGGACCTGTGGTTCTTCGCCTGTCACTTCGAA 
GGCGATCCGGTCATGCCCGGTTGCCTGGGCCTGGATGCCATGTGGCAGTTGGTCGGTTTCTACCTCGGCTGG 
CAGGGCAACCCCGGCCGCGGCCGCGCCCTGGGTTCGGGCGAAGTGAAGTTCTTCGGTCAGGTTCTGCCGACA 
GCGAAGAAGGTCACGTATAACATTCATATCAAGCGCACGATCAATCGTTCGCTGGTCCTGGCCATCGCCGAC 
GGCACCGTCAGCGTCGATGGCCGCGAAATCTACAGTGCCGAAGGCCTCCGCGTCGGCCTGTTCACCTCCACT 
GACAGCTTCTAA