ViewGene

Locus Name:
GeneID:
Location:

GeneID:4131
TrivialName: PA14_44430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44430
PAO1 Ortholog Locus:PA1550
Sequence Length:540
Protein Length:179
Start: 3955612
Stop: 3956151
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04939.1|AE004583_4 (AE004583) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 177/179 (98%), Positives = 179/179 (100%)
Sequence:
ATGCAGTCCGAGACCCACCCTCAACCCTGGTACAAACACTTCTGGGCCTGGTTCATCGTGGCCCTCCTGGCG
ACCTCGGTGGTGCTCGGGCTGAGCCTGGTCACCATCGCGGTGCGCAACCAGGACACCCTGGTCACCGACAAC
TACTACGAGGCCGGCAAGGGCATCAACCGCTCCCTGGAACGCGAGAACCTGGCCGTACGCCTGCAAGTGCAC
GCCAAGGTCAAGGTCGACGACCTGACCGGCGAAGTCGAAGTGCGACTGACCGGCAACAGCCGTCCGGAGCAA
CTCACCCTCAACCTGATCTCGCCGACCCAGCCGGAGAAGGACCGCCGCGTGGAGCTGCTGCGCAGCAACTCC
GACCGCGAGCGCTACGTCGGGCAACTGACCGACGCCGTCGAGGGCCGTCGCTTCGTCGAACTGCTCGGCCAG
GAAGGCAGCGGCCAGTGGCGCCTGTTCGAGGAAGAGGTGGTATCGCCGACCGTGGTCATGGAGCTGGGTGAC
GAACCGCTCCAGGGAGCAGAAGCGAAGCGCCCATGA
Translation:
MQSETHPQPWYKHFWAWFIVALLATSVVLGLSLVTIAVRNQDTLVTDNYYEAGKGINRSLERENLAVRLQVH
AKVKVDDLTGEVEVRLTGNSRPEQLTLNLISPTQPEKDRRVELLRSNSDRERYVGQLTDAVEGRRFVELLGQ
EGSGQWRLFEEEVVSPTVVMELGDEPLQGAEAKRP*
AnnotationID:4138GeneID:4131
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 09:09:12
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1550
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:8264
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25407
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37238
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4131_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4131

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6386 PA1550_tr translation of PA1550 179 98.88 99.99 0 910.0
175183 gb|AAG04939.1|AE004583_4 (AE004583) hypothetical protein PA1550 [Pseudomonas aeruginosa PAO1] 179 98.88 99.99 0 910.0
175184 gb|AAN69840.1|AE016623_2 (AE016790) conserved hypothetical protein [Pseudomonas putida KT2440] 179 62.01 74.86 3 558.0
175185 gb|AAO55515.1| (AE016862) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 179 60.33 73.74 1 544.0
GC ORFID: 47133How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1550Glimmer Score:
Start: 998297Stop: 997758
Length: 540
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1550 translation of PA1550Homolog Bit Score 355.0
Other Homologs: t_PA1550 (ORF: GLIMMER)
GC ORF Sequence
ATGCAGTCCGAGACCCACCCTCAACCCTGGTACAAACACTTCTGGGCCTGGTTCATCGTGGCCCTCCTGGCG
ACCTCGGTGGTGCTCGGGCTGAGCCTGGTCACCATCGCGGTGCGCAACCAGGACACCCTGGTCACCGACAAC
TACTACGAGGCCGGCAAGGGCATCAACCGCTCCCTGGAACGCGAGAACCTGGCCGTACGCCTGCAAGTGCAC
GCCAAGGTCAAGGTCGACGACCTGACCGGCGAAGTCGAAGTGCGACTGACCGGCAACAGCCGTCCGGAGCAA
CTCACCCTCAACCTGATCTCGCCGACCCAGCCGGAGAAGGACCGCCGCGTGGAGCTGCTGCGCAGCAACTCC
GACCGCGAGCGCTACGTCGGGCAACTGACCGACGCCGTCGAGGGCCGTCGCTTCGTCGAACTGCTCGGCCAG
GAAGGCAGCGGCCAGTGGCGCCTGTTCGAGGAAGAGGTGGTATCGCCGACCGTGGTCATGGAGCTGGGTGAC
GAACCGCTCCAGGGAGCAGAAGCGAAGCGCCCATGA