ViewGene
Locus Name:
GeneID:
Location:

GeneID:413
TrivialName: PA14_38080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38080
PAO1 Ortholog Locus:PA2044
Sequence Length:1875
Protein Length:624
Start: 3395836
Stop: 3397710
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05432.1|AE004631_1 (AE004631) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 622/624 (99%), Positives = 623/624 (99%)
Sequence:
ATGCCCCGTCATCCCTTCTCCCCTTCCTTCCTCGCCGCCAGCGTCTTCTGCGCCGCCACCCCGGCCCTCGCC
GCGCTGCAACCGATCGCCGAGGCGCCGCTGGCCGGCGAAACCGAGTTCCGCTGCCAGTTCAACGCCGACAAC
AGCACCGATTGCGTGAGCACCTACAGCTTCACCATCCTCAAGCCGAGCGGCCGCGAGATGCTCTCGCGCATC
GATCGCAGCTACGCGGAGACCGACAGCCTGATCGTGGAGAAGGCCGAGCTGACCCAGCCCGGCGGCAAGCCG
GTGCCGCTGGACCAGTCGCAGATCGATACGCGCACCGCGCCGAACCCGGACCAGGGCTTCCTGCGCGAACGC
CAGACCTCCCTGGCGTTCCCCAACCTGCGCGTCGGCACCCGCATCAGCTACACCCTGCGCGAGCACTTCACC
GCCAAGCCGCTGAGCACCCAGTTCCACTACATCCTCAGCCGCCCGCCGATGCCGGTGCGCGACGACCGCTTC
GTCGCCGAGTTCAAGGCCGAGCGGCCGATCTTCGTGCGCAGCGAGCTGATGGACGCCTATCGCATCGAACAG
AGCGCCGACAAGAAGACCCTCAAGGTCAGCCTGAAAAAGCCGCAATACACCAACTACATCAACGAAGCCGGC
AACGCCTACCTGCGCCATACCCCGCGCCTGGAGCTGGGCAGTTCGCTGGACCTGCAGGACAACTTCGGCCCG
TTCGCCGCGCGCTACAACGAGATCCTCGCCGCGGAGCTGCCCAAGGGCGCCGCGGCGGCCGTCGCCGCGGTG
AAGGGCAAGCCGGCCCGCGAGCAGGTCGCCGGCCTGATGCAGTACATCAACGACACCTACCGCTACCTGGGC
GACTGGCGCGCCAGCGAGCGCGGCTACGTGCCCTTCTCCCTGGCGGAGATCGAGCGCAATGGCTACGGCGAC
TGCAAGGACCTGGCGATCCTCCTCGCCGCCATGCTCAAGGCCGCCGGGATCAAGGCCGAACCGACCCTGGTC
AGCCGCGGCGACGTGGTCTGGGACCTGCTGGTGCCCGGCATGTACGCGCCGAACCATGCCATCGTCCGCGCC
GAGGTGGACGGCAAGACCTGGTGGCTGGACCCGACCAACCCGGTGTTCGCTCCCGGCCGCACCATGCCCGAC
ATCCAGCAGCGCTGGGCGCTGGTGCTGGGCGCCGACGGCAAGGTGCGGCGCGACGAGATTCCCCTGGAAGCG
CCCGGCGACACCCTGCGCGTGACCCGCAGCGAGTATTACACCCATGACGGCGAAGCCCGGGTCGAGTCGCGC
GTGGAGCTGTCCAATGCGCCGCTGATGCAGCTCAGCGTCGCCGATCGCCAGCGCGGCCGCACCAGCACCGAC
CAGGACCTGTGCCGCAACTTCGCCAAGGAAGGCAGCGACTGCGTGCTGGAGCGCGACGACAGCCAGTTCGTG
CTGCCACCCAGCTATACGATCAGTGCCAGGCTTACCGACCGCCGCGCCCTCGACCGGCTCGGCGGAGAGTAT
TTCTACAACCGCCAGGACCTGGCCAGCCAGTGGGATGCCTTCGCCAAGTACCGTAGCGAAGGCCAGTTGGCC
GAGCTGTACCTGGGCGAACCGCAGATCACCTCCTACGACATCAGCCTGTCCGGCGGCAAGACCGACGAGCCG
GCGCACAGTTGCGAGATCCGCAGCCCCTGGTTCGACATCGACCTGCAGGCCGAACCGGCCAAGGACGGCGGC
TACCACTATCGCTACCGGGAAGTGCAGAAGACCAGTTGGCTCAACCACGACGAGATCAACAGCGCCGAGTTC
GGCAAGCTGATCGAGCAGAGCCGCGGTTGCGTCGAGCAACTGCGCCTGGTGGTCAAGCTGGACAAGCGTCCC
TGA
Translation:
MPRHPFSPSFLAASVFCAATPALAALQPIAEAPLAGETEFRCQFNADNSTDCVSTYSFTILKPSGREMLSRI
DRSYAETDSLIVEKAELTQPGGKPVPLDQSQIDTRTAPNPDQGFLRERQTSLAFPNLRVGTRISYTLREHFT
AKPLSTQFHYILSRPPMPVRDDRFVAEFKAERPIFVRSELMDAYRIEQSADKKTLKVSLKKPQYTNYINEAG
NAYLRHTPRLELGSSLDLQDNFGPFAARYNEILAAELPKGAAAAVAAVKGKPAREQVAGLMQYINDTYRYLG
DWRASERGYVPFSLAEIERNGYGDCKDLAILLAAMLKAAGIKAEPTLVSRGDVVWDLLVPGMYAPNHAIVRA
EVDGKTWWLDPTNPVFAPGRTMPDIQQRWALVLGADGKVRRDEIPLEAPGDTLRVTRSEYYTHDGEARVESR
VELSNAPLMQLSVADRQRGRTSTDQDLCRNFAKEGSDCVLERDDSQFVLPPSYTISARLTDRRALDRLGGEY
FYNRQDLASQWDAFAKYRSEGQLAELYLGEPQITSYDISLSGGKTDEPAHSCEIRSPWFDIDLQAEPAKDGG
YHYRYREVQKTSWLNHDEINSAEFGKLIEQSRGCVEQLRLVVKLDKRP*
AnnotationID:422GeneID:413
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 17:05:08
Gene Name:
Confidence Code:3
GeneProduct:putative cysteine proteases
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative transglutaminase-like enzyme
Functional Category Confidence Code:5
COGs:COG1305
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases 
[Amino acid transport and metabolism]
CD-Length = 319 residues,  83.7% aligned
Score = 61.3 bits (147), Expect = 3e-10
Identities = 59/324 (18%), Positives = 91/324 (28%), Gaps = 60/324 (18%)







   
Genomic Context:






   
Comment:


















    ReferenceID:829




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17971




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32661




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:413_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:413
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
699
                           PA2044_tr
                           translation of PA2044
                           624
                           99.67
                           99.83
                           0
                           3249.0
     

     
     
31681
                           gb|AAG05432.1|AE004631_1
                           (AE004631) hypothetical protein PA2044 [Pseudomonas aeruginosa PAO1]
                           624
                           99.67
                           99.83
                           0
                           3249.0
     

     
     
31682
                           gb|AAQ58075.1|
                           (AE016911) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           628
                           46.33
                           61.62
                           15
                           1405.0
     

     






      

          
GC ORFID: 43415How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2044Glimmer Score: 

          
Start: 1558074Stop: 1556200

          
Length: 1875


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2044 translation of PA2044Homolog Bit Score 1256.0

          
Other Homologs:  t_PA2044 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCCGTCATCCCTTCTCCCCTTCCTTCCTCGCCGCCAGCGTCTTCTGCGCCGCCACCCCGGCCCTCGCC 
GCGCTGCAACCGATCGCCGAGGCGCCGCTGGCCGGCGAAACCGAGTTCCGCTGCCAGTTCAACGCCGACAAC 
AGCACCGATTGCGTGAGCACCTACAGCTTCACCATCCTCAAGCCGAGCGGCCGCGAGATGCTCTCGCGCATC 
GATCGCAGCTACGCGGAGACCGACAGCCTGATCGTGGAGAAGGCCGAGCTGACCCAGCCCGGCGGCAAGCCG 
GTGCCGCTGGACCAGTCGCAGATCGATACGCGCACCGCGCCGAACCCGGACCAGGGCTTCCTGCGCGAACGC 
CAGACCTCCCTGGCGTTCCCCAACCTGCGCGTCGGCACCCGCATCAGCTACACCCTGCGCGAGCACTTCACC 
GCCAAGCCGCTGAGCACCCAGTTCCACTACATCCTCAGCCGCCCGCCGATGCCGGTGCGCGACGACCGCTTC 
GTCGCCGAGTTCAAGGCCGAGCGGCCGATCTTCGTGCGCAGCGAGCTGATGGACGCCTATCGCATCGAACAG 
AGCGCCGACAAGAAGACCCTCAAGGTCAGCCTGAAAAAGCCGCAATACACCAACTACATCAACGAAGCCGGC 
AACGCCTACCTGCGCCATACCCCGCGCCTGGAGCTGGGCAGTTCGCTGGACCTGCAGGACAACTTCGGCCCG 
TTCGCCGCGCGCTACAACGAGATCCTCGCCGCGGAGCTGCCCAAGGGCGCCGCGGCGGCCGTCGCCGCGGTG 
AAGGGCAAGCCGGCCCGCGAGCAGGTCGCCGGCCTGATGCAGTACATCAACGACACCTACCGCTACCTGGGC 
GACTGGCGCGCCAGCGAGCGCGGCTACGTGCCCTTCTCCCTGGCGGAGATCGAGCGCAATGGCTACGGCGAC 
TGCAAGGACCTGGCGATCCTCCTCGCCGCCATGCTCAAGGCCGCCGGGATCAAGGCCGAACCGACCCTGGTC 
AGCCGCGGCGACGTGGTCTGGGACCTGCTGGTGCCCGGCATGTACGCGCCGAACCATGCCATCGTCCGCGCC 
GAGGTGGACGGCAAGACCTGGTGGCTGGACCCGACCAACCCGGTGTTCGCTCCCGGCCGCACCATGCCCGAC 
ATCCAGCAGCGCTGGGCGCTGGTGCTGGGCGCCGACGGCAAGGTGCGGCGCGACGAGATTCCCCTGGAAGCG 
CCCGGCGACACCCTGCGCGTGACCCGCAGCGAGTATTACACCCATGACGGCGAAGCCCGGGTCGAGTCGCGC 
GTGGAGCTGTCCAATGCGCCGCTGATGCAGCTCAGCGTCGCCGATCGCCAGCGCGGCCGCACCAGCACCGAC 
CAGGACCTGTGCCGCAACTTCGCCAAGGAAGGCAGCGACTGCGTGCTGGAGCGCGACGACAGCCAGTTCGTG 
CTGCCACCCAGCTATACGATCAGTGCCAGGCTTACCGACCGCCGCGCCCTCGACCGGCTCGGCGGAGAGTAT 
TTCTACAACCGCCAGGACCTGGCCAGCCAGTGGGATGCCTTCGCCAAGTACCGTAGCGAAGGCCAGTTGGCC 
GAGCTGTACCTGGGCGAACCGCAGATCACCTCCTACGACATCAGCCTGTCCGGCGGCAAGACCGACGAGCCG 
GCGCACAGTTGCGAGATCCGCAGCCCCTGGTTCGACATCGACCTGCAGGCCGAACCGGCCAAGGACGGCGGC 
TACCACTATCGCTACCGGGAAGTGCAGAAGACCAGTTGGCTCAACCACGACGAGATCAACAGCGCCGAGTTC 
GGCAAGCTGATCGAGCAGAGCCGCGGTTGCGTCGAGCAACTGCGCCTGGTGGTCAAGCTGGACAAGCGTCCC 
TGA