ViewGene
Locus Name:
GeneID:
Location:

GeneID:4129
TrivialName: PA14_61020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61020
PAO1 Ortholog Locus:PA4612
Sequence Length:552
Protein Length:183
Start: 5442589
Stop: 5442038
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08000.1|AE004875_6 (AE004875) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 182/183 (99%), Positives = 183/183 (100%)
Sequence:
ATGACGACGATGCGAGGTTGGATTCTGGCAGGCTTGCTGCTCGCGGCGCTGGCCGCGCAGGCTGGCGAGGTG
CATGGGGTCGAGGTCGAAGCGCGGTTGCGCGACTACTTCTTCGATGCCGCCCGACGCGGTGACCAGGCCATG
CTGAAGGAATTCGTCGAGGCCGGCTTCGACCTCGATGTGCAGGATGCCAAGGGCTATACCGCGCTGATCCTG
GCCGCCTACCACGGCCATGGCGGAGCGGTGGAACAATTGCTGGAGGCCGGTGCCGACCCCTGCGTCCAGGAT
GCGCGCGGCAACACCGCCCTGATGGGCGCCATCTTCAAGGGCGAGGTCCGCATCGCCCGGCGCCTGATCGGC
GCGCAATGCAGCCCCGACCAGCGCAACGGCGCAGGGCAGACCGCGGCCATGTACGCGGCGCTGTTCAAGCGC
GAGGAGCTGCTCCAGGCGCTGTCGGCGCGCGGTGCCGACCTTGGCGCCCGCGATGCGCTGGGCAACAGCGTG
GAAAGCCTGCGACGCGGCGAACTGAACGGCACTGCGGCGGCGAAGTGA
Translation:
MTTMRGWILAGLLLAALAAQAGEVHGVEVEARLRDYFFDAARRGDQAMLKEFVEAGFDLDVQDAKGYTALIL
AAYHGHGGAVEQLLEAGADPCVQDARGNTALMGAIFKGEVRIARRLIGAQCSPDQRNGAGQTAAMYAALFKR
EELLQALSARGADLGARDALGNSVESLRRGELNGTAAAK*
AnnotationID:4136GeneID:4129
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 07:07:34
Gene Name:
Confidence Code:3
GeneProduct:ankyrin-like protein
Cell Localization:()
Synonyms:ankB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00204
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM38863.1| (AE012051) ankyrin-like protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 195

 Score =  203 bits (516), Expect = 5e-52
 Identities = 102/167 (61%), Positives = 126/167 (75%)


>gb|AAO57057.1| (AE016868) ankyrin domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 184

 Score =  191 bits (485), Expect = 2e-48
 Identities = 96/174 (55%), Positives = 126/174 (72%), Gaps = 6/174 (3%)








 
Structural Features:
cd00204, ANK, ankyrin repeats
CD-Length = 126 residues,  88.9% aligned
Score = 86.7 bits (214), Expect = 3e-18
Identities = 38/112 (33%), Positives = 57/112 (50%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8260




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25403




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31612




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4129_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4129
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6384
                           PA4612_tr
                           translation of PA4612
                           183
                           99.45
                           99.99
                           0
                           914.0
     

     
     
175140
                           gb|AAG08000.1|AE004875_6
                           (AE004875) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           183
                           99.45
                           99.99
                           0
                           914.0
     

     
     
175141
                           gb|AAB02828.1|
                           (U59457) AnkB [Pseudomonas aeruginosa]
                           183
                           99.45
                           99.99
                           0
                           914.0
     

     
     
175142
                           gb|AAB49464.1|
                           (U89384) ankyrin [Pseudomonas aeruginosa]
                           183
                           97.81
                           98.36
                           3
                           899.0
     

     
     
175144
                           gb|AAM43169.1|
                           (AE012515) ankyrin-like protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           192
                           56.25
                           70.31
                           10
                           518.0
     

     






      

          
GC ORFID: 47131How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4612Glimmer Score: 

          
Start: 4706269Stop: 4705718

          
Length: 552


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4612 translation of PA4612Homolog Bit Score 356.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8181 (ORF: BLASTX 189.0), psyr_15may02_Scaffold1_revised_gene863 (ORF: BLASTX 102.0), t_PA4612 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGACGATGCGAGGTTGGATTCTGGCAGGCTTGCTGCTCGCGGCGCTGGCCGCGCAGGCTGGCGAGGTG 
CATGGGGTCGAGGTCGAAGCGCGGTTGCGCGACTACTTCTTCGATGCCGCCCGACGCGGTGACCAGGCCATG 
CTGAAGGAATTCGTCGAGGCCGGCTTCGACCTCGATGTGCAGGATGCCAAGGGCTATACCGCGCTGATCCTG 
GCCGCCTACCACGGCCATGGCGGAGCGGTGGAACAATTGCTGGAGGCCGGTGCCGACCCCTGCGTCCAGGAT 
GCGCGCGGCAACACCGCCCTGATGGGCGCCATCTTCAAGGGCGAGGTCCGCATCGCCCGGCGCCTGATCGGC 
GCGCAATGCAGCCCCGACCAGCGCAACGGCGCAGGGCAGACCGCGGCCATGTACGCGGCGCTGTTCAAGCGC 
GAGGAGCTGCTCCAGGCGCTGTCGGCGCGCGGTGCCGACCTTGGCGCCCGCGATGCGCTGGGCAACAGCGTG 
GAAAGCCTGCGACGCGGCGAACTGAACGGCACTGCGGCGGCGAAGTGA