ViewGene

Locus Name:
GeneID:
Location:

GeneID:4128
TrivialName: PA14_08710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08710
PAO1 Ortholog Locus:PA4275
Sequence Length:534
Protein Length:177
Start: 743059
Stop: 743592
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07663.1|AE004843_5 (AE004843) transcription antitermination protein NusG [Pseudomonas aeruginosa PAO1]
Identities = 177/177 (100%), Positives = 177/177 (100%)
Sequence:
GTGGCTAAGCGTTGGTACGTTGTGCATGCATACTCGGGCTACGAGAAGCATGTCATGCGCTCGCTGATCGAG
CGTGTCAAGCTTGCTGGCATGGAAGAAGAGTTCGGCGAGATTCTGGTTCCCACCGAAGAAGTGGTGGAGATG
CGGAACGGCCAGAAGCGCAAGAGCGAGCGCAAATTCTTCCCTGGCTATGTGCTGGTTCAGATGGAAATGAAC
GAAGGTACCTGGCACCTGGTGAAGGATACCCCGCGCGTCATGGGCTTCATCGGCGGGACTGCCGACAAGCCG
GCTCCGATCACCGATCGTGAGGCTGATGCAATCCTGCGTCGCGTGGCCGATAGCGGCGACAAGCCCAAGCCG
AAGACCCTGTTCGAGCCGGGCGAGACCGTTCGTGTCATCGATGGTCCTTTCGCCGACTTCAATGGTGTCGTC
GAAGAAGTTAACTACGAGAAGAGCCGGATCCAAGTGGCCGTGCTCATCTTTGGCCGCTCTACCCCGGTGGAG
CTGGAGTTCAGTCAGGTCGAAAAGGTCTAG
Translation:
MAKRWYVVHAYSGYEKHVMRSLIERVKLAGMEEEFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMEMN
EGTWHLVKDTPRVMGFIGGTADKPAPITDREADAILRRVADSGDKPKPKTLFEPGETVRVIDGPFADFNGVV
EEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV*
AnnotationID:4135GeneID:4128
AnnotatorUID: diggins
Modification Date/Time: 2005-04-03 17:05:12
Gene Name:nusG
Confidence Code:2
GeneProduct:transcription antitermination protein NusG
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0250
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66072.1|AE016236_6 (AE016775) transcription antitermination protein NusG [Pseudomonas
           putida KT2440]
          Length = 177

 Score =  341 bits (875), Expect = 1e-93
 Identities = 168/177 (94%), Positives = 172/177 (97%)

>gb|AAO54156.1| (AE016858) transcription antitermination protein NusG [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 177

 Score =  338 bits (866), Expect = 1e-92
 Identities = 165/176 (93%), Positives = 170/176 (96%)

>gb|AAN53304.1|AE015471_9 (AE015471) transcription antitermination protein NusG [Shewanella
           oneidensis MR-1]
          Length = 183

 Score =  271 bits (692), Expect = 2e-72
 Identities = 127/174 (72%), Positives = 153/174 (87%)
Structural Features:
COG0250, NusG, Transcription antiterminator [Transcription]
CD-Length = 178 residues,  99.4% aligned
Score =  206 bits (526), Expect = 9e-55
Identities = 95/177 (53%), Positives = 123/177 (69%)
Genomic Context:
Comment:
ReferenceID:15026
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25401
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36640
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4128_cdd.html
URL:
ReferenceID:36783
Author/Investigator(s): Downing WL, Sullivan SL, Gottesman ME, Dennis PP.
Title: Sequence and transcriptional pattern of the essential Escherichia coli secE-nusG operon.
PubMed: 2137819
MedLine:
Source:
J Bacteriol. 1990 Mar;172(3):1621-7.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2137819
ReferenceID:36786
Author/Investigator(s): Li J, Horwitz R, McCracken S, Greenblatt J.
Title: NusG, a new Escherichia coli elongation factor involved in transcriptional antitermination by the N protein of phage lambda.
PubMed: 1532577
MedLine:
Source:
J Biol Chem. 1992 Mar 25;267(9):6012-9.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1532577
Homologs By Global Alignment
Gene ID:4128

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6383 PA4275_tr translation of PA4275 177 99.99 99.99 0 914.0
175046 gb|AAG07663.1|AE004843_5 (AE004843) transcription antitermination protein NusG [Pseudomonas aeruginosa PAO1] 177 99.43 99.99 0 911.0
175047 gb|AAN66072.1|AE016236_6 (AE016775) transcription antitermination protein NusG [Pseudomonas putida KT2440] 177 94.35 97.17 0 871.0
175048 gb|AAO54156.1| (AE016858) transcription antitermination protein NusG [Pseudomonas syringae pv. tomato str. DC3000] 177 92.65 96.04 0 862.0
175057 gb|AAF33495.1| (AF170176) 99% identity over 181 amino acids with E. coli transcription antitermination factor (NUSG) (SW:P16921) [Salmonella typhimurium LT2] 181 70.71 83.42 4 687.0
GC ORFID: 47130How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4275Glimmer Score:
Start: 4210880Stop: 4210347
Length: 534
Start Codon: GTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA4275 translation of PA4275Homolog Bit Score 356.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene80 (ORF: BLASTX 337.0), t_PA4275 (ORF: GLIMMER)
GC ORF Sequence
GTGGCTAAGCGTTGGTACGTTGTGCATGCATACTCGGGCTACGAGAAGCATGTCATGCGCTCGCTGATCGAG
CGTGTCAAGCTTGCTGGCATGGAAGAAGAGTTCGGCGAGATTCTGGTTCCCACCGAAGAAGTGGTGGAGATG
CGGAACGGCCAGAAGCGCAAGAGCGAGCGCAAATTCTTCCCTGGCTATGTGCTGGTTCAGATGGAAATGAAC
GAAGGTACCTGGCACCTGGTGAAGGATACCCCGCGCGTCATGGGCTTCATCGGCGGGACTGCCGACAAGCCG
GCTCCGATCACCGATCGTGAGGCTGATGCAATCCTGCGTCGCGTGGCCGATAGCGGCGACAAGCCCAAGCCG
AAGACCCTGTTCGAGCCGGGCGAGACCGTTCGTGTCATCGATGGTCCTTTCGCCGACTTCAATGGTGTCGTC
GAAGAAGTTAACTACGAGAAGAGCCGGATCCAAGTGGCCGTGCTCATCTTTGGCCGCTCTACCCCGGTGGAG
CTGGAGTTCAGTCAGGTCGAAAAGGTCTAG