ViewGene
Locus Name:
GeneID:
Location:

GeneID:4127
TrivialName: PA14_24840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24840
PAO1 Ortholog Locus:PA3034
Sequence Length:558
Protein Length:185
Start: 2171419
Stop: 2171976
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06422.1|AE004728_8 (AE004728) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 184/185 (99%), Positives = 184/185 (99%)
Sequence:
ATGACATCCCGCAAACGCGAGCAACTGCTCAGCACCGCCGTCGACCTGTTCTATCGCGAGGGTTACCACGCC
ACCGGCATCGACCGCATCCTGGCCGAATCCGGCGTGGCGAAGATGACGCTGTACAAACACTTTCGCTCGAAG
GACGAACTGATCATGGCCGCCCTGGAGGTGCGTCGGCAGCGCACCGCCGAACGCATGCTCGAAGCCGAGGCG
CGGTTGCAGCCGCGCGCGGTGATCCTGGCGGTGTTCGATGGTCTGCAGGAGTTCCTCCAGGACGAGGCGTTC
CGTGGCTGTGCCTTCATCCATGCCGCCGCCGAGTTCCATGAGCGCTCGCATCCGATCCACCGCCAGGCGGCC
GAGCAAAAGGCCTTCGTCGAAGCCTACTTCCAGCGCCAGCTGGAGCGCCTGGGCGTGCGTTCGGCGGCACTG
CTTGCGCGGCAGTTGCAATACCTGATGGAGGGCGCCCTGGTGATGGCGCACATCCACGGGCCGGCGGACCAG
GCCCGTGAGGCCCGGCAGGCGGCCGAAAGTCTGTTGCAGGTCGCTGGCATCTGA
Translation:
MTSRKREQLLSTAVDLFYREGYHATGIDRILAESGVAKMTLYKHFRSKDELIMAALEVRRQRTAERMLEAEA
RLQPRAVILAVFDGLQEFLQDEAFRGCAFIHAAAEFHERSHPIHRQAAEQKAFVEAYFQRQLERLGVRSAAL
LARQLQYLMEGALVMAHIHGPADQAREARQAAESLLQVAGI*
AnnotationID:4134GeneID:4127
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 06:06:10
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA3034
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00440
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.
CD-Length = 47 residues, 100.0% aligned
Score = 53.0 bits (128), Expect = 2e-08
Identities = 22/47 (46%), Positives = 32/47 (68%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8256




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25399




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36024




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4127_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4127
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6382
                           PA3034_tr
                           translation of PA3034
                           185
                           99.45
                           99.45
                           0
                           913.0
     

     
     
175044
                           gb|AAG06422.1|AE004728_8
                           (AE004728) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           185
                           99.45
                           99.45
                           0
                           913.0
     

     
     
175045
                           dbj|BAB54261.1|
                           (AP003012) transcriptional regulator [Mesorhizobium loti]
                           194
                           39.69
                           57.73
                           10
                           310.0
     

     






      

          
GC ORFID: 47129How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3034Glimmer Score: 

          
Start: 2782509Stop: 2781952

          
Length: 558


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3034 translation of PA3034Homolog Bit Score 356.0

          
Other Homologs:  t_PA3034 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACATCCCGCAAACGCGAGCAACTGCTCAGCACCGCCGTCGACCTGTTCTATCGCGAGGGTTACCACGCC 
ACCGGCATCGACCGCATCCTGGCCGAATCCGGCGTGGCGAAGATGACGCTGTACAAACACTTTCGCTCGAAG 
GACGAACTGATCATGGCCGCCCTGGAGGTGCGTCGGCAGCGCACCGCCGAACGCATGCTCGAAGCCGAGGCG 
CGGTTGCAGCCGCGCGCGGTGATCCTGGCGGTGTTCGATGGTCTGCAGGAGTTCCTCCAGGACGAGGCGTTC 
CGTGGCTGTGCCTTCATCCATGCCGCCGCCGAGTTCCATGAGCGCTCGCATCCGATCCACCGCCAGGCGGCC 
GAGCAAAAGGCCTTCGTCGAAGCCTACTTCCAGCGCCAGCTGGAGCGCCTGGGCGTGCGTTCGGCGGCACTG 
CTTGCGCGGCAGTTGCAATACCTGATGGAGGGCGCCCTGGTGATGGCGCACATCCACGGGCCGGCGGACCAG 
GCCCGTGAGGCCCGGCAGGCGGCCGAAAGTCTGTTGCAGGTCGCTGGCATCTGA