ViewGene

Locus Name:
GeneID:
Location:

GeneID:4126
TrivialName: PA14_27110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27110
PAO1 Ortholog Locus:PA2861
Sequence Length:549
Protein Length:182
Start: 2355845
Stop: 2355297
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06249.1|AE004712_9 (AE004712) 2'-5' RNA ligase [Pseudomonas aeruginosa PAO1]
Identities = 176/182 (96%), Positives = 177/182 (97%)
Sequence:
ATGCCCGATCGCTCTCTTCGCCTGTTCTTCGCCCTGCCCTGTCCACCTCCCCTCGCCGAGCGGATCGGCCGG
TGGCGCGATGACCAGCCACTGCCCGGACGCCAGGTGGCGACGGCGAACCTGCACCTGACCCTGGCCTTCCTC
GGGCAGGTCCCGTCCGCTCGGCTCGAGGCCCTGCTGGACATGGCCGCGGCCATCGAAGCCGCGCCCTTCGAC
CTGTGTCTCGACCGCCTGCTGCGCTGGAGGAACGGCATCCTGCTGCTGGCCCCCAGCCAACCGCCCGGCGCC
CTCCTGCGCCTGCGCCGCGCCCTGCGCTCAGGCCTTGCCGAACTGGAGCTGCCCGTGGAAACCCGCCCATTC
AGCGCCCATCTGACCCTGGCTCGCGATGCCGCGCCGCTGGAGGACATCCCGCCACCCCCAACCTTCGTATGG
CAGGTCGACCATTTCAGCCTGTTTTGCTCGCAAAACGACGCCGCGGGCGTGCGCTACCGCACACTCGGTCGC
TGGGCGTTGTGCGGGGAAGATTCAAACGAGCGTTTCGCGCCGTAA
Translation:
MPDRSLRLFFALPCPPPLAERIGRWRDDQPLPGRQVATANLHLTLAFLGQVPSARLEALLDMAAAIEAAPFD
LCLDRLLRWRNGILLLAPSQPPGALLRLRRALRSGLAELELPVETRPFSAHLTLARDAAPLEDIPPPPTFVW
QVDHFSLFCSQNDAAGVRYRTLGRWALCGEDSNERFAP*
AnnotationID:4133GeneID:4126
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 06:06:51
Gene Name:ligT
Confidence Code:2
GeneProduct:2'-5' RNA ligase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1514
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:6.5.1.-
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG1514, LigT, 2'-5' RNA ligase 
[Translation, ribosomal structure and biogenesis]
CD-Length = 180 residues,  99.4% aligned
Score =  124 bits (312), Expect = 7e-30
Identities = 60/179 (33%), Positives = 79/179 (44%), Gaps = 12/179 (6%)
Genomic Context:
Comment:
ReferenceID:8254
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25397
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36203
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4126_cdd.html
URL:
ReferenceID:36406
Author/Investigator(s): Barany F, Gelfand DH.
Title: Cloning, overexpression and nucleotide sequence of a thermostable DNA ligase-encoding gene.
PubMed: 1756968
MedLine:
Source:
Gene. 1991 Dec 20;109(1):1-11.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1756968
Homologs By Global Alignment
Gene ID:4126

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6381 PA2861_tr translation of PA2861 182 96.70 97.25 0 914.0
175033 gb|AAG06249.1|AE004712_9 (AE004712) 2'-5' RNA ligase [Pseudomonas aeruginosa PAO1] 182 96.70 97.25 0 914.0
175034 gb|AAN78674.1|AE016755_174 (AE016755) 2'-5' RNA ligase [Escherichia coli CFT073] 189 40.21 49.73 17 284.0
175035 gb|AAC73258.1| (AE000124) orf, hypothetical protein [Escherichia coli K12] 189 39.68 49.20 17 279.0
175036 dbj|BAB96724.1| (D26562) Hypothetical 20.3 kd protein in sfsA-mrcB intergenic region. [Escherichia coli] 189 39.68 49.20 17 279.0
GC ORFID: 47128How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2861Glimmer Score:
Start: 2598081Stop: 2598629
Length: 549
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA2861 translation of PA2861Homolog Bit Score 356.0
Other Homologs: t_PA2861 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCGATCGCTCTCTTCGCCTGTTCTTCGCCCTGCCCTGTCCACCTCCCCTCGCCGAGCGGATCGGCCGG
TGGCGCGATGACCAGCCACTGCCCGGACGCCAGGTGGCGACGGCGAACCTGCACCTGACCCTGGCCTTCCTC
GGGCAGGTCCCGTCCGCTCGGCTCGAGGCCCTGCTGGACATGGCCGCGGCCATCGAAGCCGCGCCCTTCGAC
CTGTGTCTCGACCGCCTGCTGCGCTGGAGGAACGGCATCCTGCTGCTGGCCCCCAGCCAACCGCCCGGCGCC
CTCCTGCGCCTGCGCCGCGCCCTGCGCTCAGGCCTTGCCGAACTGGAGCTGCCCGTGGAAACCCGCCCATTC
AGCGCCCATCTGACCCTGGCTCGCGATGCCGCGCCGCTGGAGGACATCCCGCCACCCCCAACCTTCGTATGG
CAGGTCGACCATTTCAGCCTGTTTTGCTCGCAAAACGACGCCGCGGGCGTGCGCTACCGCACACTCGGTCGC
TGGGCGTTGTGCGGGGAAGATTCAAACGAGCGTTTCGCGCCGTAA