ViewGene
Locus Name:
GeneID:
Location:

GeneID:4124
TrivialName: PA14_32860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32860
PAO1 Ortholog Locus:PA2455
Sequence Length:537
Protein Length:178
Start: 2877069
Stop: 2876533
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05843.1|AE004673_3 (AE004673) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 170/175 (97%), Positives = 171/175 (97%)
Sequence:
ATGACCGAAGAACGCCTGCTGCGCCGCGACGAAATCCCCCTGGTCTGGGAGATCGACCGCAGCGAAGTGATC
GAGCACCTGTATTCCGTCGAGGCCGGCCAACTGGTGCTGCGCCCCGAGTTCTACGACATGCGCGGCTGGCCG
GAGGGCGAGGCCGAGCACTACACGCCGATCCTGCTCGACTGCTTCGACCGCGGCGGCTGGTTCCTCGGCCTG
TTCGACCAGGGCCACCTGATCGGCGCGGTAGTCCtcgACCCGCGCCGCCTCGGCCCCGAGCGCGACTGGCTG
CAACTGAAGTTTCTCCACCTCAGCCACGCCTACCGCCGCCGCAGCCTCGGCGCCCACCTCTTCCACCTCGCC
GCCACCCAGGCCCGCCACCTCGGCGCCAGCGCGCTCTACGTTTCGGCTACGCCGTCGCAGAACACGGTGGAT
TTTTATACGAGACTCGGATGCCGGCTGTGCATGGAACCGGATGAGGAGTTGTATCGGTTGGAGCCGGAGGAT
GTTCATCTGGTCTATGGGTTAGGGGGTAGATAA
Translation:
MTEERLLRRDEIPLVWEIDRSEVIEHLYSVEAGQLVLRPEFYDMRGWPEGEAEHYTPILLDCFDRGGWFLGL
FDQGHLIGAVVLDPRRLGPERDWLQLKFLHLSHAYRRRSLGAHLFHLAATQARHLGASALYVSATPSQNTVD
FYTRLGCRLCMEPDEELYRLEPEDVHLVYGLGGR*
AnnotationID:4131GeneID:4124
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 15:03:15
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2455
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8250




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25393




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4124
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6379
                           PA2455_tr
                           translation of PA2455
                           178
                           95.50
                           96.06
                           3
                           914.0
     

     
     
174890
                           gb|AAG05843.1|AE004673_3
                           (AE004673) hypothetical protein PA2455 [Pseudomonas aeruginosa PAO1]
                           178
                           95.50
                           96.06
                           3
                           914.0
     

     






      

          
GC ORFID: 47126How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2455Glimmer Score: 

          
Start: 2076855Stop: 2077391

          
Length: 537


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2455 translation of PA2455Homolog Bit Score 356.0

          
Other Homologs:  t_PA2455 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGAAGAACGCCTGCTGCGCCGCGACGAAATCCCCCTGGTCTGGGAGATCGACCGCAGCGAAGTGATC 
GAGCACCTGTATTCCGTCGAGGCCGGCCAACTGGTGCTGCGCCCCGAGTTCTACGACATGCGCGGCTGGCCG 
GAGGGCGAGGCCGAGCACTACACGCCGATCCTGCTCGACTGCTTCGACCGCGGCGGCTGGTTCCTCGGCCTG 
TTCGACCAGGGCCACCTGATCGGCGCGGTAGTCCtcgACCCGCGCCGCCTCGGCCCCGAGCGCGACTGGCTG 
CAACTGAAGTTTCTCCACCTCAGCCACGCCTACCGCCGCCGCAGCCTCGGCGCCCACCTCTTCCACCTCGCC 
GCCACCCAGGCCCGCCACCTCGGCGCCAGCGCGCTCTACGTTTCGGCTACGCCGTCGCAGAACACGGTGGAT 
TTTTATACGAGACTCGGATGCCGGCTGTGCATGGAACCGGATGAGGAGTTGTATCGGTTGGAGCCGGAGGAT 
GTTCATCTGGTCTATGGGTTAGGGGGTAGATAA