ViewGene
Locus Name:
GeneID:
Location:

GeneID:4123
TrivialName: PA14_34070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34070
PAO1 Ortholog Locus:PA2365
Sequence Length:546
Protein Length:181
Start: 3029709
Stop: 3029164
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05753.1|AE004662_8 (AE004662) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 181/181 (100%), Positives = 181/181 (100%)
Sequence:
ATGGCCGAGAGTACGCAGCACAAGCTGGACCGGGTGCGCCCGCCGCGCGTGCAGATCACCTACGACGTCGAG
ATCGGCAACGCCATCGAGAAGAAGGAGCTGCCCCTGGTGGTCGGCATCCTCGCCGACCTCTCCGGCAAGCCG
GATACCCCGCCGGCGAAGCTGGTCGAACGGCGTTTCGTCGACATCGACCGCGACAACTTCAACGAGATCCTC
TCCTCCATCTCTCCCCGCGCCACCCTGCAGGTCGACAACACCATCAGCGGCGACGACAGCAAGCTGAACGTC
GAGCTGCGCTTCAACCACATCGAGGACTTCGACCCGGTCAACCTGGTGAAGCAGGTGGTCCCGTTGCGTCGC
CTGTTCGAAGCGCGCCAGCGCCTGCGCGACCTGCTGACCAAGCTCGACGGCAACGACGACCTCGACCAGTTG
CTGCAGGACGTGGTGGCCAACACCGAAGGCCTGCAGGAAATCAAAGCGGCCCGCCCGGAAGCCGAAGCGGCC
CCGGCCGGCGACAGCGAACCCCCGGCCGACCAGCCGGCCTGA
Translation:
MAESTQHKLDRVRPPRVQITYDVEIGNAIEKKELPLVVGILADLSGKPDTPPAKLVERRFVDIDRDNFNEIL
SSISPRATLQVDNTISGDDSKLNVELRFNHIEDFDPVNLVKQVVPLRRLFEARQRLRDLLTKLDGNDDLDQL
LQDVVANTEGLQEIKAARPEAEAAPAGDSEPPADQPA*
AnnotationID:4130GeneID:4123
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 16:04:50
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2365
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAB92577.1| (AF037441) putative 19.5 kDa protein [Edwardsiella ictaluri]
          Length = 170

 Score =  175 bits (443), Expect = 1e-43
 Identities = 85/157 (54%), Positives = 112/157 (71%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8248




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25391




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32911




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4123_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4123
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6378
                           PA2365_tr
                           translation of PA2365
                           181
                           99.99
                           99.99
                           0
                           913.0
     

     
     
174875
                           gb|AAG05753.1|AE004662_8
                           (AE004662) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           181
                           99.99
                           99.99
                           0
                           913.0
     

     
     
174876
                           gb|AAN68708.1|AE016501_9
                           (AE016785) conserved hypothetical protein [Pseudomonas putida KT2440]
                           196
                           53.57
                           66.32
                           20
                           501.0
     

     
     
174877
                           gb|AAQ61641.1|
                           (AE016924) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           182
                           50.00
                           64.83
                           15
                           460.0
     

     
     
174879
                           gb|AAB92577.1|
                           (AF037441) putative 19.5 kDa protein [Edwardsiella ictaluri]
                           182
                           48.35
                           63.18
                           13
                           435.0
     

     






      

          
GC ORFID: 47125How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2365Glimmer Score: 

          
Start: 1924207Stop: 1924752

          
Length: 546


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2365 translation of PA2365Homolog Bit Score 356.0

          
Other Homologs:  psyr_15may02_Scaffold14_revised_gene2301 (ORF: BLASTX 195.0), t_PA2365 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCGAGAGTACGCAGCACAAGCTGGACCGGGTGCGCCCGCCGCGCGTGCAGATCACCTACGACGTCGAG 
ATCGGCAACGCCATCGAGAAGAAGGAGCTGCCCCTGGTGGTCGGCATCCTCGCCGACCTCTCCGGCAAGCCG 
GATACCCCGCCGGCGAAGCTGGTCGAACGGCGTTTCGTCGACATCGACCGCGACAACTTCAACGAGATCCTC 
TCCTCCATCTCTCCCCGCGCCACCCTGCAGGTCGACAACACCATCAGCGGCGACGACAGCAAGCTGAACGTC 
GAGCTGCGCTTCAACCACATCGAGGACTTCGACCCGGTCAACCTGGTGAAGCAGGTGGTCCCGTTGCGTCGC 
CTGTTCGAAGCGCGCCAGCGCCTGCGCGACCTGCTGACCAAGCTCGACGGCAACGACGACCTCGACCAGTTG 
CTGCAGGACGTGGTGGCCAACACCGAAGGCCTGCAGGAAATCAAAGCGGCCCGCCCGGAAGCCGAAGCGGCC 
CCGGCCGGCGACAGCGAACCCCCGGCCGACCAGCCGGCCTGA