ViewGene
Locus Name:
GeneID:
Location:

GeneID:4122
TrivialName: PA14_38190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38190
PAO1 Ortholog Locus:PA2036
Sequence Length:522
Protein Length:173
Start: 3407320
Stop: 3406799
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05424.1|AE004630_1 (AE004630) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 172/173 (99%), Positives = 173/173 (100%)
Sequence:
ATGTGGTTTCTTGGGAAGATGGGGTTCACGTACGGCTCCTCGCATTATCGCTACGAAGGTTTTGAAGGTAAG
GTTTTGGAAGTAGGTAGTGGGCCGATCGGCTTTTTCGAGAAGGTCGAAGGCGTGACAGTGACTGCCCAGGAC
TCATTGATGGGGCTGTATGCAGAGAATCTTCCATTCTCGATTCTCGGGGAAAGAGGTTCTTCTTGTTATATA
AGGGATGGTGTTGCCGATATAGAGAGTGCGTTCGATTTCGTCGTTTGCTCAAATGTGCTTGACCATACGGCC
GACTGGATCCAATTCCTGATTGACTGTGTGGGCAGGTTGAGGACGGGCGGTGAGTTACTGTTGGTGACTGAC
TCGCGCGGAGTTCCAGCAATCGGGCATACACAGATATTCAGCCATGATCAACTGGTTCGTGTCTTGGAGTTG
CTGGGAGCAAAGCAGTTCAAGGTGAAAGCCGTCGAGCGGGAGGATGGCGTTCACTGTGACTATCGTCATTAT
TTTCGGGTGGTTTTCTGA
Translation:
MWFLGKMGFTYGSSHYRYEGFEGKVLEVGSGPIGFFEKVEGVTVTAQDSLMGLYAENLPFSILGERGSSCYI
RDGVADIESAFDFVVCSNVLDHTADWIQFLIDCVGRLRTGGELLLVTDSRGVPAIGHTQIFSHDQLVRVLEL
LGAKQFKVKAVEREDGVHCDYRHYFRVVF*
AnnotationID:4129GeneID:4122
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 05:05:08
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2036
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8246




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25389




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32665




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4122_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4122
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6377
                           PA2036_tr
                           translation of PA2036
                           173
                           99.42
                           99.99
                           0
                           914.0
     

     
     
174874
                           gb|AAG05424.1|AE004630_1
                           (AE004630) hypothetical protein PA2036 [Pseudomonas aeruginosa PAO1]
                           173
                           99.42
                           99.99
                           0
                           914.0
     

     






      

          
GC ORFID: 47124How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2036Glimmer Score: 

          
Start: 1546590Stop: 1547111

          
Length: 522


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2036 translation of PA2036Homolog Bit Score 356.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGTGGTTTCTTGGGAAGATGGGGTTCACGTACGGCTCCTCGCATTATCGCTACGAAGGTTTTGAAGGTAAG 
GTTTTGGAAGTAGGTAGTGGGCCGATCGGCTTTTTCGAGAAGGTCGAAGGCGTGACAGTGACTGCCCAGGAC 
TCATTGATGGGGCTGTATGCAGAGAATCTTCCATTCTCGATTCTCGGGGAAAGAGGTTCTTCTTGTTATATA 
AGGGATGGTGTTGCCGATATAGAGAGTGCGTTCGATTTCGTCGTTTGCTCAAATGTGCTTGACCATACGGCC 
GACTGGATCCAATTCCTGATTGACTGTGTGGGCAGGTTGAGGACGGGCGGTGAGTTACTGTTGGTGACTGAC 
TCGCGCGGAGTTCCAGCAATCGGGCATACACAGATATTCAGCCATGATCAACTGGTTCGTGTCTTGGAGTTG 
CTGGGAGCAAAGCAGTTCAAGGTGAAAGCCGTCGAGCGGGAGGATGGCGTTCACTGTGACTATCGTCATTAT 
TTTCGGGTGGTTTTCTGA