ViewGene
Locus Name:
GeneID:
Location:

GeneID:4121
TrivialName: PA14_47030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47030
PAO1 Ortholog Locus:PA1332
Sequence Length:552
Protein Length:183
Start: 4189368
Stop: 4189919
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04721.1|AE004562_8 (AE004562) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 181/183 (98%), Positives = 182/183 (99%)
Sequence:
GTGGTAGGCACCGTAGCGTTGGCCATTCCAGCCCTCGCGGTTGTCGCCGCGCGGGTTGGAGCTGAACAGCAC
GCCGCCCGGCCGCAGCGCTTCGAAGAGTTCGCCGAGCACCCGCGGCAAGGCGCTGCCGGGCACATGGAACAG
GCTGGCGTTGGCGAAGATGCCGTCGAAGTGCCCAGCCGGCAGTCGCAGCGCCAGGAAATTCTGTTGCCATAC
CTCGCAACCGCTGTCGGCCCTGGCCATCTCGACGAAGCGCGGCGTGCCTTCGAGTCCCACCGGCTGGTGGCC
GAGGCGGCGGAAGGTGGCCAGGTCGCGCCCGGGACCGCAGCCGAAATCGAGGATCCGGTACGGCGGCGGCCC
GTCGATATGGCGCAGCAGCGCCTCGACGTTCTGGCTCACGTCATGGCCGCGGGTGCCCTCGCGGAAGCCTTC
GGCGTTGCGCTGATAGTCGGCCAGGGTGGTGGCGGTGATCGCGTCGAAATCCTCGGTGCTCATGTCTGCTCG
CAGTGGCGGGGTTCCGCCCAGTCTAGCGCCGGCACGGGTTTCGCCTAA
Translation:
MVGTVALAIPALAVVAARVGAEQHAARPQRFEEFAEHPRQGAAGHMEQAGVGEDAVEVPSRQSQRQEILLPY
LATAVGPGHLDEARRAFESHRLVAEAAEGGQVAPGTAAEIEDPVRRRPVDMAQQRLDVLAHVMAAGALAEAF
GVALIVGQGGGGDRVEILGAHVCSQWRGSAQSSAGTGFA*
AnnotationID:4128GeneID:4121
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 07:07:18
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1332
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15024




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25387




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4121
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6376
                           PA1332_tr
                           translation of PA1332
                           183
                           98.90
                           99.45
                           0
                           914.0
     

     
     
174873
                           gb|AAG04721.1|AE004562_8
                           (AE004562) hypothetical protein PA1332 [Pseudomonas aeruginosa PAO1]
                           183
                           98.36
                           99.45
                           0
                           911.0
     

     






      

          
GC ORFID: 47123How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1332Glimmer Score: 

          
Start: 764541Stop: 763990

          
Length: 552


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1332 translation of PA1332Homolog Bit Score 356.0

          
Other Homologs:  

          
GC ORF Sequence

           
GTGGTAGGCACCGTAGCGTTGGCCATTCCAGCCCTCGCGGTTGTCGCCGCGCGGGTTGGAGCTGAACAGCAC 
GCCGCCCGGCCGCAGCGCTTCGAAGAGTTCGCCGAGCACCCGCGGCAAGGCGCTGCCGGGCACATGGAACAG 
GCTGGCGTTGGCGAAGATGCCGTCGAAGTGCCCAGCCGGCAGTCGCAGCGCCAGGAAATTCTGTTGCCATAC 
CTCGCAACCGCTGTCGGCCCTGGCCATCTCGACGAAGCGCGGCGTGCCTTCGAGTCCCACCGGCTGGTGGCC 
GAGGCGGCGGAAGGTGGCCAGGTCGCGCCCGGGACCGCAGCCGAAATCGAGGATCCGGTACGGCGGCGGCCC 
GTCGATATGGCGCAGCAGCGCCTCGACGTTCTGGCTCACGTCATGGCCGCGGGTGCCCTCGCGGAAGCCTTC 
GGCGTTGCGCTGATAGTCGGCCAGGGTGGTGGCGGTGATCGCGTCGAAATCCTCGGTGCTCATGTCTGCTCG 
CAGTGGCGGGGTTCCGCCCAGTCTAGCGCCGGCACGGGTTTCGCCTAA