ViewGene
Locus Name:
GeneID:
Location:

GeneID:4120
TrivialName: PA14_60120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60120
PAO1 Ortholog Locus:
Sequence Length:534
Protein Length:177
Start: 5355289
Stop: 5354756
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84131.1| (AY273869) deoxycytidine deaminase [Pseudomonas aeruginosa]
Identities = 177/177 (100%), Positives = 177/177 (100%)
Sequence:
ATGATTTACTCACCGCACTCGCTCCTGAAACTGGTCCGGGATGGAAAACTAATCAAGCACCTTGCCCACCGT
GAGTTGACCACCCCGGAAGGCGTTGGATTTGACCTCAGACTCGCAGGCCTCTCTCGCCTGACAGTAGGGGGT
GGAAGCTTGCGAGAATCTACGCGACGCACCCCTGCCAGCGAGGTCGTGCTCGCAGACCCGGATGACTGCTTC
GTCATGGAACCGGGCAAGACTTATCTGGCGAGCACCATGGAAGAATTCGATCTGCCGGAAGATCTGGCGGCG
CTTTTTTTTCCGAGAAGCACGCTGTTCAGAAGCGGGATAACGTTCAGTTCCAGTGTGCTGCCTCCAGGTTAT
GTAGGGCCGATGACGTTCGCGCTCACCAACAATCACAGCGAGGCGTTTGAAATTCAGATTGGTGCACGCTTT
GCGCACGTCATCTTTCAGGCGGTATCCGGGGATATCGGCCGGTATAAAGGACAATGGCAGGGTGGCCGCGTC
TCGCAGCCCAAGGACGAAGGACAAATCTGA
Translation:
MIYSPHSLLKLVRDGKLIKHLAHRELTTPEGVGFDLRLAGLSRLTVGGGSLRESTRRTPASEVVLADPDDCF
VMEPGKTYLASTMEEFDLPEDLAALFFPRSTLFRSGITFSSSVLPPGYVGPMTFALTNNHSEAFEIQIGARF
AHVIFQAVSGDIGRYKGQWQGGRVSQPKDEGQI*
AnnotationID:4127GeneID:4120
AnnotatorUID: diggins
Modification Date/Time: 2006-02-02 23:11:25
Gene Name:
Confidence Code:3
GeneProduct:putative deoxycytidine deaminase
Cell Localization:()
Synonyms:dcd2
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8242




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17060




  
Author/Investigator(s):
        





  
Title:
        CDD research




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:NCBI CD-4120.htm


    		




 
URL:

















    ReferenceID:25385




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4120
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
174872
                           gb|AAP84131.1|
                           (AY273869) deoxycytidine deaminase [Pseudomonas aeruginosa]
                           177
                           99.99
                           99.99
                           0
                           915.0
     

     






      

          
GC ORFID: 47122How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL004Glimmer Score: 

          
Start: 4618968Stop: 4618435

          
Length: 534


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL004 Dcd_2 177 Homolog: MK1566 / Deoxycytidine deaminase / Methanopyrus kandleri / AV19 (AAM02779) translation of RL004Homolog Bit Score 357.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGATTTACTCACCGCACTCGCTCCTGAAACTGGTCCGGGATGGAAAACTAATCAAGCACCTTGCCCACCGT 
GAGTTGACCACCCCGGAAGGCGTTGGATTTGACCTCAGACTCGCAGGCCTCTCTCGCCTGACAGTAGGGGGT 
GGAAGCTTGCGAGAATCTACGCGACGCACCCCTGCCAGCGAGGTCGTGCTCGCAGACCCGGATGACTGCTTC 
GTCATGGAACCGGGCAAGACTTATCTGGCGAGCACCATGGAAGAATTCGATCTGCCGGAAGATCTGGCGGCG 
CTTTTTTTTCCGAGAAGCACGCTGTTCAGAAGCGGGATAACGTTCAGTTCCAGTGTGCTGCCTCCAGGTTAT 
GTAGGGCCGATGACGTTCGCGCTCACCAACAATCACAGCGAGGCGTTTGAAATTCAGATTGGTGCACGCTTT 
GCGCACGTCATCTTTCAGGCGGTATCCGGGGATATCGGCCGGTATAAAGGACAATGGCAGGGTGGCCGCGTC 
TCGCAGCCCAAGGACGAAGGACAAATCTGA