ViewGene
Locus Name:
GeneID:
Location:

GeneID:4119
TrivialName: PA14_47320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47320
PAO1 Ortholog Locus:PA1308
Sequence Length:525
Protein Length:174
Start: 4215869
Stop: 4215345
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04697.1|AE004560_5 (AE004560) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 173/174 (99%), Positives = 174/174 (100%)
Sequence:
ATGTTCCGCAGTTACCTGAGACTGGTGCTGTTCACCCTGGGCCTGCTGCTCGGGGTGCAGGTGCCCGGCTTC
ATCGACGACTACGCCAAACGCGTCGACGCCCATCGCCTGGAGGCGGCGCAGAACATCCAGGGCTTCCAGCAG
ACCGCCGGACAGTTCTTCAACGGCAGCCTGGAGGAACTGGTCAGGCATTACCGCAGCAACAGCGATCCGGTG
TTCCAGCGCGACGGCGAGAACCTCGACCGCCTGATGCGCCGCGCGCGCATGCTCGACGCCGAGTGGCAGGCC
ATGCAGGGGCCCTGGTACGCCCGCGCCTGGCACATGCTGCGCGCACCGAACCATGAGTTGCTGATGGAAACC
TATGCCAGCTACAGCTACCAGGTCCTGCTCAAGCCCGAGGTGATCGCCTGGGGCCTGGGCTGCGCCTTGCTG
GTCGCCTGGATCGCCGAGCTGATCGTGTATTCGCTGGCCTCGCTGTTCGGCTTCGGCGAAGACCGCCGCACC
CGCGAGCGTCACTGGAGCTGA
Translation:
MFRSYLRLVLFTLGLLLGVQVPGFIDDYAKRVDAHRLEAAQNIQGFQQTAGQFFNGSLEELVRHYRSNSDPV
FQRDGENLDRLMRRARMLDAEWQAMQGPWYARAWHMLRAPNHELLMETYASYSYQVLLKPEVIAWGLGCALL
VAWIAELIVYSLASLFGFGEDRRTRERHWS*
AnnotationID:4126GeneID:4119
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 05:05:52
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1308
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8240




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25383




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4119
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6375
                           PA1308_tr
                           translation of PA1308
                           174
                           99.42
                           99.99
                           0
                           917.0
     

     
     
174869
                           gb|AAG04697.1|AE004560_5
                           (AE004560) hypothetical protein PA1308 [Pseudomonas aeruginosa PAO1]
                           174
                           99.42
                           99.99
                           0
                           917.0
     

     
     
174870
                           gb|AAO57374.1|
                           (AE016870) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           174
                           50.00
                           69.54
                           0
                           469.0
     

     
     
174871
                           gb|AAN70153.1|AE016654_10
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           174
                           46.55
                           66.09
                           1
                           445.0
     

     






      

          
GC ORFID: 47121How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1308Glimmer Score: 

          
Start: 738040Stop: 738564

          
Length: 525


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1308 translation of PA1308Homolog Bit Score 357.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1743 (ORF: BLASTX 186.0), t_PA1308 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCCGCAGTTACCTGAGACTGGTGCTGTTCACCCTGGGCCTGCTGCTCGGGGTGCAGGTGCCCGGCTTC 
ATCGACGACTACGCCAAACGCGTCGACGCCCATCGCCTGGAGGCGGCGCAGAACATCCAGGGCTTCCAGCAG 
ACCGCCGGACAGTTCTTCAACGGCAGCCTGGAGGAACTGGTCAGGCATTACCGCAGCAACAGCGATCCGGTG 
TTCCAGCGCGACGGCGAGAACCTCGACCGCCTGATGCGCCGCGCGCGCATGCTCGACGCCGAGTGGCAGGCC 
ATGCAGGGGCCCTGGTACGCCCGCGCCTGGCACATGCTGCGCGCACCGAACCATGAGTTGCTGATGGAAACC 
TATGCCAGCTACAGCTACCAGGTCCTGCTCAAGCCCGAGGTGATCGCCTGGGGCCTGGGCTGCGCCTTGCTG 
GTCGCCTGGATCGCCGAGCTGATCGTGTATTCGCTGGCCTCGCTGTTCGGCTTCGGCGAAGACCGCCGCACC 
CGCGAGCGTCACTGGAGCTGA