ViewGene
Locus Name:
GeneID:
Location:

GeneID:4118
TrivialName: PA14_48790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48790
PAO1 Ortholog Locus:PA1199
Sequence Length:534
Protein Length:177
Start: 4338090
Stop: 4337557
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04588.1|AE004550_4 (AE004550) probable lipoprotein [Pseudomonas aeruginosa PAO1]
Identities = 176/177 (99%), Positives = 177/177 (100%)
Sequence:
ATGCATGCACTGGCCCGATTCTCGATCCTCGCCTTTGCTGCGCTGCTTACCGCCTGCGCCAGCAAAGCGCCG
CCCCCCGCGCCCGCCAAACAGGTCGTATTCCGTCCGGCGACGAATTTCTCGCCCGCCGCCGACGATGTGCTG
TTCCGTGCCCTCGGCCTGGTCGGCACGCCCTACCGCTGGGGCGGCAACACGCCCGATTCGGGCTTCGATTGC
AGCGGCCTGATCAACTTCGTCTACCGCGACATGACCGGCATCAAGCTGCCGCGCTCGACCCGCGAGATGATT
TCCATGCGCGCGCCCAGCGTGCCGGTGCAGGCCCTGCAGACCGGCGACCTGGTGTTCTTCGCCACCTCCGGT
GGACGCACTGTGAGCCATGCCGGCATCTACGTCGGCGAGGGTCGCTTCGTGCATGCGCCGCGCACCGGCGGC
ACGGTGCGCCTGGACAGCCTGCAGAACAGCTACTGGCAACGCGCGTACCTGGACGCCAAGCGCGTGCTGGTT
GCGCCGTCACCCTTGGCGCGGATGCCCTGA
Translation:
MHALARFSILAFAALLTACASKAPPPAPAKQVVFRPATNFSPAADDVLFRALGLVGTPYRWGGNTPDSGFDC
SGLINFVYRDMTGIKLPRSTREMISMRAPSVPVQALQTGDLVFFATSGGRTVSHAGIYVGEGRFVHAPRTGG
TVRLDSLQNSYWQRAYLDAKRVLVAPSPLARMP*
AnnotationID:4125GeneID:4118
AnnotatorUID: diggins
Modification Date/Time: 2005-02-21 19:07:37
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA1199
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0791,pfam00877
Secondary Functional Category(ies):fatty acid and phospholipid metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67291.1|AE016355_9 (AE016780) lipoprotein, putative [Pseudomonas putida KT2440]
          Length = 177

 Score =  242 bits (618), Expect = 7e-64
 Identities = 121/168 (72%), Positives = 135/168 (80%), Gaps = 1/168 (0%)

>gb|AAO55226.1| (AE016861) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 181

 Score =  237 bits (604), Expect = 3e-62
 Identities = 121/181 (66%), Positives = 139/181 (76%), Gaps = 7/181 (3%)

>gb|AAM41855.1| (AE012370) lipoprotein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
          Length = 191

 Score =  181 bits (458), Expect = 2e-45
 Identities = 88/158 (55%), Positives = 118/158 (74%), Gaps = 6/158 (3%)








 
Structural Features:
COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) 
[Cell envelope biogenesis, outer membrane]
CD-Length = 197 residues, only  78.2% aligned
Score =  126 bits (317), Expect = 3e-30
Identities = 65/147 (44%), Positives = 88/147 (59%), Gaps = 2/147 (1%)

pfam00877, NLPC_P60, NlpC/P60 family.
CD-Length = 106 residues, 100.0% aligned
Score =  118 bits (296), Expect = 1e-27
Identities = 49/111 (44%), Positives = 69/111 (62%), Gaps = 6/111 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8238




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25381




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37558




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4118_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4118
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6372
                           PA1199_tr
                           translation of PA1199
                           177
                           99.43
                           99.99
                           0
                           916.0
     

     
     
174784
                           gb|AAG04588.1|AE004550_4
                           (AE004550) probable lipoprotein [Pseudomonas aeruginosa PAO1]
                           177
                           99.43
                           99.99
                           0
                           916.0
     

     
     
174785
                           gb|AAN67291.1|AE016355_9
                           (AE016780) lipoprotein, putative [Pseudomonas putida KT2440]
                           182
                           68.13
                           76.92
                           10
                           625.0
     

     
     
174786
                           gb|AAO55226.1|
                           (AE016861) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           183
                           66.12
                           75.95
                           8
                           610.0
     

     
     
174787
                           gb|AAM41855.1|
                           (AE012370) lipoprotein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           202
                           44.05
                           59.90
                           36
                           456.0
     

     






      

          
GC ORFID: 47120How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1199Glimmer Score: 

          
Start: 615818Stop: 616351

          
Length: 534


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1199 translation of PA1199Homolog Bit Score 357.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6466 (ORF: BLASTX 241.0), t_PA1198 (ORF: BLASTX 153.0), t_PA3472 (ORF: BLASTX 146.0), t_PA1199 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATGCACTGGCCCGATTCTCGATCCTCGCCTTTGCTGCGCTGCTTACCGCCTGCGCCAGCAAAGCGCCG 
CCCCCCGCGCCCGCCAAACAGGTCGTATTCCGTCCGGCGACGAATTTCTCGCCCGCCGCCGACGATGTGCTG 
TTCCGTGCCCTCGGCCTGGTCGGCACGCCCTACCGCTGGGGCGGCAACACGCCCGATTCGGGCTTCGATTGC 
AGCGGCCTGATCAACTTCGTCTACCGCGACATGACCGGCATCAAGCTGCCGCGCTCGACCCGCGAGATGATT 
TCCATGCGCGCGCCCAGCGTGCCGGTGCAGGCCCTGCAGACCGGCGACCTGGTGTTCTTCGCCACCTCCGGT 
GGACGCACTGTGAGCCATGCCGGCATCTACGTCGGCGAGGGTCGCTTCGTGCATGCGCCGCGCACCGGCGGC 
ACGGTGCGCCTGGACAGCCTGCAGAACAGCTACTGGCAACGCGCGTACCTGGACGCCAAGCGCGTGCTGGTT 
GCGCCGTCACCCTTGGCGCGGATGCCCTGA