ViewGene
Locus Name:
GeneID:
Location:

GeneID:4117
TrivialName: PA14_53890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53890
PAO1 Ortholog Locus:PA0800
Sequence Length:534
Protein Length:177
Start: 4778360
Stop: 4777827
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04189.1|AE004515_5 (AE004515) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 174/177 (98%), Positives = 174/177 (98%)
Sequence:
ATGGCGCGGCGGACGAATGCGACGGGATACGACCCGCACTCGTCGGACCCCGGCAATCCCTGGCGCGACGCG
ACCTGGCGGTCGTCCGGAGCAAGTACAAATGCGAACGTAATTGAGATACAGTCGCAACCCTTCCGAATCGAC
GACCGCCTCGCCACCCGCGAGCGCGGCGTCGCCGTGCCAGCCAGACGAGGTAGCGACGATGCAAGGCCCTGT
TTCCACCCGGGACGCCGCCCCATGACCAGCCCGGCCCTGGCCGGCGGACTGTCCGTCACCGGCCGCATCCTC
GTCGCGGTCCTGCTTGGCTACGCGCTGGCCTATGCGGTCACCGCCTGCCTGAGCATCTACCTGCCGCTGCCG
CGTCCCGACCGGGTCTCGTTCGGCAGCCTCGGCTGCTTCGCCGTGTGGGTCGCGGCCATCGTCTACGCCTTC
GCCGCGCGCAGCGCCTGGCGCGCCTGCTGGGTGCTGGCGCTGGCCAGCCTGGCGCTGGGCGGCCTGGCCTGG
CTCGGCCTCGACTACGGAGCGCGTCCATGA
Translation:
MARRTNATGYDPHSSDPGNPWRDATWRSSGASTNANVIEIQSQPFRIDDRLATRERGVAVPARRGSDDARPC
FHPGRRPMTSPALAGGLSVTGRILVAVLLGYALAYAVTACLSIYLPLPRPDRVSFGSLGCFAVWVAAIVYAF
AARSAWRACWVLALASLALGGLAWLGLDYGARP*
AnnotationID:4124GeneID:4117
AnnotatorUID: danlee
Modification Date/Time: 2004-04-16 16:04:49
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0800
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8236




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25379




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4117
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6371
                           PA0800_tr
                           translation of PA0800
                           177
                           98.30
                           98.30
                           0
                           915.0
     

     
     
174783
                           gb|AAG04189.1|AE004515_5
                           (AE004515) hypothetical protein PA0800 [Pseudomonas aeruginosa PAO1]
                           177
                           98.30
                           98.30
                           0
                           915.0
     

     






      

          
GC ORFID: 47119How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0800Glimmer Score: 

          
Start: 175547Stop: 176080

          
Length: 534


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0800 translation of PA0800Homolog Bit Score 357.0

          
Other Homologs:  t_PA0800 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGCGGCGGACGAATGCGACGGGATACGACCCGCACTCGTCGGACCCCGGCAATCCCTGGCGCGACGCG 
ACCTGGCGGTCGTCCGGAGCAAGTACAAATGCGAACGTAATTGAGATACAGTCGCAACCCTTCCGAATCGAC 
GACCGCCTCGCCACCCGCGAGCGCGGCGTCGCCGTGCCAGCCAGACGAGGTAGCGACGATGCAAGGCCCTGT 
TTCCACCCGGGACGCCGCCCCATGACCAGCCCGGCCCTGGCCGGCGGACTGTCCGTCACCGGCCGCATCCTC 
GTCGCGGTCCTGCTTGGCTACGCGCTGGCCTATGCGGTCACCGCCTGCCTGAGCATCTACCTGCCGCTGCCG 
CGTCCCGACCGGGTCTCGTTCGGCAGCCTCGGCTGCTTCGCCGTGTGGGTCGCGGCCATCGTCTACGCCTTC 
GCCGCGCGCAGCGCCTGGCGCGCCTGCTGGGTGCTGGCGCTGGCCAGCCTGGCGCTGGGCGGCCTGGCCTGG 
CTCGGCCTCGACTACGGAGCGCGTCCATGA