ViewGene
Locus Name:
GeneID:
Location:

GeneID:4116
TrivialName: PA14_08040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08040
PAO1 Ortholog Locus:PA0619
Sequence Length:534
Protein Length:177
Start: 690976
Stop: 691509
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04008.1|AE004498_3 (AE004498) probable bacteriophage protein [Pseudomonas aeruginosa PAO1]
Identities = 176/177 (99%), Positives = 177/177 (100%)
Sequence:
ATGAGTAGCCGACTGCTGCCGCCAAACAGGAGTTCTCTGGAACGCTCTCTGGGTGATGTATTGCCTGCCGAA
CTGCCGGTGCCGCTTCGTGAGCTTAACGATCCGGCACGCTGTGAGGCGGCCTTGCTGCCCTACCTGGCCTGG
ACGCGCTCGGTGGACCGCTGGGACCCGGACTGGAGCGACGAGGCCAAGCGCAATGCGGTAGCGACGTCCTTC
GTCCTGCACCAGCGCAAAGGCACGCTGACAGCGTTGCGCCAAGTGGTCGAGCCGATCGGTGCGCTGAGCGAG
GTCACCGAATGGTGGCAGCGAAGCCCGACCGGCGTGCCGGGGACCTTCGAGATCACCGTGGACGTCAGCGAC
CGTGGCATCGACGAAGGCACCGTACTGGAGCTGGAGCGCTTGCTCGATGACGTCCGCCCGGTGAGCCGACAC
CTGACCCGCCTGGACCTGCGCATCACCCCGGTAATCCGGTCCCGTCACGGACTGGCCGTGACCGACGGCGAC
ACCCTGGAAATCTTCCCCTGGAAACAGTGA
Translation:
MSSRLLPPNRSSLERSLGDVLPAELPVPLRELNDPARCEAALLPYLAWTRSVDRWDPDWSDEAKRNAVATSF
VLHQRKGTLTALRQVVEPIGALSEVTEWWQRSPTGVPGTFEITVDVSDRGIDEGTVLELERLLDDVRPVSRH
LTRLDLRITPVIRSRHGLAVTDGDTLEIFPWKQ*
AnnotationID:4123GeneID:4116
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 13:01:51
Gene Name:
Confidence Code:3
GeneProduct:putative phage tail protein
Cell Localization:()
Synonyms:gpI
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4385
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56877.1| (AE016868) tail protein I [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 201

 Score =  163 bits (413), Expect = 4e-40
 Identities = 80/170 (47%), Positives = 108/170 (63%)

>gb|AAN79439.1|AE016758_43 (AE016758) Putative phage tail protein [Escherichia coli CFT073]
          Length = 201

 Score =  154 bits (388), Expect = 3e-37
 Identities = 77/173 (44%), Positives = 104/173 (60%), Gaps = 4/173 (2%)








 
Structural Features:
COG4385, gpI, Bacteriophage P2-related tail formation protein
CD-Length = 206 residues,  87.4% aligned
Score =  225 bits (575), Expect = 2e-60
Identities = 101/180 (56%), Positives = 128/180 (71%), Gaps = 3/180 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8234




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25377




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33895




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4116_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4116
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6370
                           PA0619_tr
                           translation of PA0619
                           177
                           99.43
                           99.99
                           0
                           918.0
     

     
     
174771
                           gb|AAG04008.1|AE004498_3
                           (AE004498) probable bacteriophage protein [Pseudomonas aeruginosa PAO1]
                           177
                           99.43
                           99.99
                           0
                           918.0
     

     
     
174772
                           dbj|BAA83157.1|
                           (AB030825) PRF14~similar to I genes of P2 and phiCTX: tail formation [Pseudomonas aeruginosa]
                           177
                           99.43
                           99.99
                           0
                           918.0
     

     
     
174773
                           dbj|BAB03227.1|
                           (AB046380) tail formation protein [Pseudomonas aeruginosa]
                           177
                           99.43
                           99.43
                           0
                           917.0
     

     
     
174774
                           gb|AAO56877.1|
                           (AE016868) tail protein I [Pseudomonas syringae pv. tomato str. DC3000]
                           202
                           40.59
                           54.95
                           26
                           406.0
     

     






      

          
GC ORFID: 47118How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0619Glimmer Score: 

          
Start: 6492319Stop: 6492852

          
Length: 534


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0619 translation of PA0619Homolog Bit Score 358.0

          
Other Homologs:  t_PA0619 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTAGCCGACTGCTGCCGCCAAACAGGAGTTCTCTGGAACGCTCTCTGGGTGATGTATTGCCTGCCGAA 
CTGCCGGTGCCGCTTCGTGAGCTTAACGATCCGGCACGCTGTGAGGCGGCCTTGCTGCCCTACCTGGCCTGG 
ACGCGCTCGGTGGACCGCTGGGACCCGGACTGGAGCGACGAGGCCAAGCGCAATGCGGTAGCGACGTCCTTC 
GTCCTGCACCAGCGCAAAGGCACGCTGACAGCGTTGCGCCAAGTGGTCGAGCCGATCGGTGCGCTGAGCGAG 
GTCACCGAATGGTGGCAGCGAAGCCCGACCGGCGTGCCGGGGACCTTCGAGATCACCGTGGACGTCAGCGAC 
CGTGGCATCGACGAAGGCACCGTACTGGAGCTGGAGCGCTTGCTCGATGACGTCCGCCCGGTGAGCCGACAC 
CTGACCCGCCTGGACCTGCGCATCACCCCGGTAATCCGGTCCCGTCACGGACTGGCCGTGACCGACGGCGAC 
ACCCTGGAAATCTTCCCCTGGAAACAGTGA