ViewGene
Locus Name:
GeneID:
Location:

GeneID:4113
TrivialName: PA14_65580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65580
PAO1 Ortholog Locus:PA4962
Sequence Length:537
Protein Length:178
Start: 5842015
Stop: 5842551
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08347.1|AE004909_3 (AE004909) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 176/178 (98%), Positives = 177/178 (99%)
Sequence:
GTGACCACCCTGATCACCCACCCGCTGCCGGTCCTGGCGGTGGGACTGGCCCTTGGCAGCCGGGTGATCCCG
CCACGCCTGCTGCTGGCAGGCATGCTCGCCGCCTGCCTGCCGGACTTCGACGTAGTCGCCTTCAAGCTCGGC
ATCGCCTATCACGATGCCTTCGGCCATCGCGGCTTCAGCCATTCGCTATTGTTCGCCGCGATCCTCGGCGCG
CTCGCCGCCCTCGCCTGCCGGCCGCTGCATAGCGGACCGCTGAAAGCCGGGCTGTGGGTGGCGCTGGCCACC
GCCTCGCACAGCCTGCTGGACGCGATGACCAATGGCGGGCTGGGCGTCGCCTGGTTCTGGCCCTGGAGCGAC
GCCCGCTACTTCATGCCCTTCCATCCGATCGCCGTGTCGCCGATCGGTCTGTCGCGCTTCCTCAGCGAACGC
GGATTGCTGGTGCTGCAATCGGAGGCGCGCTGGGTCTGGCTGCCCTGCCTGCTGCTGGCGCTCGCCGGCATG
GCCCTGCGCTTCCTGTTGCGCCGCTCACGCTGA
Translation:
MTTLITHPLPVLAVGLALGSRVIPPRLLLAGMLAACLPDFDVVAFKLGIAYHDAFGHRGFSHSLLFAAILGA
LAALACRPLHSGPLKAGLWVALATASHSLLDAMTNGGLGVAWFWPWSDARYFMPFHPIAVSPIGLSRFLSER
GLLVLQSEARWVWLPCLLLALAGMALRFLLRRSR*
AnnotationID:4120GeneID:4113
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 17:05:11
Gene Name:
Confidence Code:3
GeneProduct:putative membrane-bound metal-dependent hydrolase
Cell Localization:()
Synonyms:ybcI
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1988,pfam04307
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL19494.1| (AE008721) putative membrane-bound metal-dependent hydrolases
           [Salmonella typhimurium LT2]
          Length = 181

 Score =  173 bits (439), Expect = 4e-43
 Identities = 87/179 (48%), Positives = 118/179 (65%), Gaps = 1/179 (0%)

>gb|AAO69917.1| (AE016841) putative membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi Ty2]
          Length = 182

 Score =  170 bits (431), Expect = 3e-42
 Identities = 83/160 (51%), Positives = 109/160 (68%), Gaps = 1/160 (0%)








 
Structural Features:
COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases
CD-Length = 190 residues,  97.4% aligned
Score = 78.9 bits (194), Expect = 3e-16
Identities = 69/187 (36%), Positives = 83/187 (44%), Gaps = 13/187 (6%)

pfam04307, DUF457, Predicted membrane-bound metal-dependent hydrolase
CD-Length = 86 residues, 100.0% aligned
Score = 71.1 bits (174), Expect = 6e-14
Identities = 38/89 (42%), Positives = 42/89 (47%), Gaps = 3/89 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15022




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25371




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35025




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4113_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4113
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6363
                           PA4962_tr
                           translation of PA4962
                           178
                           98.87
                           99.43
                           0
                           919.0
     

     
     
174705
                           gb|AAG08347.1|AE004909_3
                           (AE004909) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           178
                           98.31
                           99.43
                           0
                           916.0
     

     
     
174707
                           gb|AAM40025.1|
                           (AE012169) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           183
                           52.45
                           63.38
                           9
                           435.0
     

     
     
174716
                           gb|AAM35652.1|
                           (AE011707) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           180
                           47.77
                           61.66
                           3
                           403.0
     

     
     
174713
                           emb|CAD05022.1|
                           (AL627267) putative membrane protein [Salmonella enterica subsp. enterica serovar Typhi]
                           183
                           47.54
                           66.12
                           6
                           425.0
     

     






      

          
GC ORFID: 47115How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4962Glimmer Score: 

          
Start: 5105696Stop: 5106232

          
Length: 537


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4962 translation of PA4962Homolog Bit Score 358.0

          
Other Homologs:  t_PA4962 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACCACCCTGATCACCCACCCGCTGCCGGTCCTGGCGGTGGGACTGGCCCTTGGCAGCCGGGTGATCCCG 
CCACGCCTGCTGCTGGCAGGCATGCTCGCCGCCTGCCTGCCGGACTTCGACGTAGTCGCCTTCAAGCTCGGC 
ATCGCCTATCACGATGCCTTCGGCCATCGCGGCTTCAGCCATTCGCTATTGTTCGCCGCGATCCTCGGCGCG 
CTCGCCGCCCTCGCCTGCCGGCCGCTGCATAGCGGACCGCTGAAAGCCGGGCTGTGGGTGGCGCTGGCCACC 
GCCTCGCACAGCCTGCTGGACGCGATGACCAATGGCGGGCTGGGCGTCGCCTGGTTCTGGCCCTGGAGCGAC 
GCCCGCTACTTCATGCCCTTCCATCCGATCGCCGTGTCGCCGATCGGTCTGTCGCGCTTCCTCAGCGAACGC 
GGATTGCTGGTGCTGCAATCGGAGGCGCGCTGGGTCTGGCTGCCCTGCCTGCTGCTGGCGCTCGCCGGCATG 
GCCCTGCGCTTCCTGTTGCGCCGCTCACGCTGA