ViewGene
Locus Name:
GeneID:
Location:

GeneID:4112
TrivialName: PA14_63030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63030
PAO1 Ortholog Locus:PA4765
Sequence Length:531
Protein Length:176
Start: 5624106
Stop: 5624636
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08151.1|AE004890_4 (AE004890) Outer membrane lipoprotein OmlA precursor [Pseudomonas aeruginosa PAO1]
Identities = 175/176 (99%), Positives = 175/176 (99%)
Sequence:
ATGCAAAACGCCAAGCTCATGCTGACCTGTCTCGCTTTCGCGGGGCTTGCCGCACTCGCCGGTTGCTCGTTT
CCTGGCGTCTATAAAATCGACATCCAGCAAGGCAACGTCGTAACGCAGGACATGATAGACCAGTTGCGCCCC
GGAATGACCCGACGCCAAGTGCGGTTTATCATGGGCAACCCGCTGATCGTCGATACCTTCCACGCCAATCGT
TGGGACTACCTCTACAGCATCCAGCCGGGCGGCGGTCGTCGCCAGCAGGAGCGCGTCAGCCTGTTCTTCAAC
GACAGCGACCAACTGGCCGGCCTGAACGGCGACTTCATGCCCGGCGTCAGCCGCGACGAAGCGATCCTCGGC
AAGGAAGGCAGCACCACCGTCACCCAGCCGGCCGACCAGCAGAAACCGGAAGAGCAGAAGGAAGAGCCGCCG
AAACCGGGCTCCACCCTGGAACAGCTCCAGCGCGAAGTGGACGAGGCCCAGCCGGTACCGGTTCCGACCCCC
GAACCTTTGGACCCCAGCCCGCAATGA
Translation:
MQNAKLMLTCLAFAGLAALAGCSFPGVYKIDIQQGNVVTQDMIDQLRPGMTRRQVRFIMGNPLIVDTFHANR
WDYLYSIQPGGGRRQQERVSLFFNDSDQLAGLNGDFMPGVSRDEAILGKEGSTTVTQPADQQKPEEQKEEPP
KPGSTLEQLQREVDEAQPVPVPTPEPLDPSPQ*
AnnotationID:4119GeneID:4112
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 11:11:31
Gene Name:omlA
Confidence Code:1
GeneProduct:outer membrane lipoprotein OmlA precursor
Cell Localization:()
Synonyms:oprX
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2913,pfam04355
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57957.1| (AE016872) outer membrane lipoprotein OmlA [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 173

 Score =  263 bits (672), Expect = 4e-70
 Identities = 128/176 (72%), Positives = 145/176 (82%), Gaps = 3/176 (1%)

>gb|AAN70303.1|AE016671_4 (AE016791) outer membrane lipoprotein OmlA [Pseudomonas putida
           KT2440]
          Length = 178

 Score =  258 bits (660), Expect = 9e-69
 Identities = 127/176 (72%), Positives = 143/176 (81%), Gaps = 4/176 (2%)

>gb|AAN03806.1|AF490983_6 (AF490983) outer membrane lipoprotein precursor OmlA [Azotobacter
           vinelandii]
          Length = 171

 Score =  255 bits (652), Expect = 7e-68
 Identities = 124/176 (70%), Positives = 143/176 (81%), Gaps = 5/176 (2%)






 
Structural Features:
COG2913, SmpA, Small protein A (tmRNA-binding) 
[Translation, ribosomal structure and biogenesis]
CD-Length = 147 residues,  99.3% aligned
Score =  143 bits (361), Expect = 1e-35
Identities = 55/162 (33%), Positives = 72/162 (44%), Gaps = 18/162 (11%)

pfam04355, SmpA_OmlA, SmpA / OmlA family.
CD-Length = 86 residues,  95.3% aligned
Score =  104 bits (260), Expect = 7e-24
Identities = 35/82 (42%), Positives = 62/82 (75%), Gaps = 2/82 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8226




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25369




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36562




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4112_cdd.html


    		




 
URL:

















    ReferenceID:36623




  
Author/Investigator(s):
        Ochsner UA, Vasil AI, Johnson Z, Vasil ML.





  
Title:
        Pseudomonas aeruginosa fur overlaps with a gene encoding a novel outer membrane lipoprotein, OmlA.




  
PubMed:
        9973334


MedLine:
        




    
Source:
J Bacteriol. 1999 Feb;181(4):1099-109.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9973334









           
Homologs By Global Alignment 

           

       



     
Gene ID:4112
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6362
                           PA4765_tr
                           translation of PA4765
                           176
                           99.43
                           99.43
                           0
                           919.0
     

     
     
174698
                           gb|AAG08151.1|AE004890_4
                           (AE004890) Outer membrane lipoprotein OmlA precursor [Pseudomonas aeruginosa PAO1]
                           176
                           99.43
                           99.43
                           0
                           919.0
     

     
     
174699
                           gb|AAC05678.1|
                           (AF050676) lipoprotein [Pseudomonas aeruginosa]
                           176
                           99.43
                           99.43
                           0
                           919.0
     

     
     
174701
                           gb|AAO57957.1|
                           (AE016872) outer membrane lipoprotein OmlA [Pseudomonas syringae pv. tomato str. DC3000]
                           176
                           73.86
                           83.52
                           3
                           677.0
     

     
     
174700
                           gb|AAC05681.1|
                           (AF050677) lipoprotein [Pseudomonas fluorescens]
                           177
                           72.88
                           83.05
                           3
                           686.0
     

     






      

          
GC ORFID: 47114How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4765Glimmer Score: 

          
Start: 4887786Stop: 4888316

          
Length: 531


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4765 translation of PA4765Homolog Bit Score 358.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5588 (ORF: BLASTX 267.0), t_PA4765 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAAACGCCAAGCTCATGCTGACCTGTCTCGCTTTCGCGGGGCTTGCCGCACTCGCCGGTTGCTCGTTT 
CCTGGCGTCTATAAAATCGACATCCAGCAAGGCAACGTCGTAACGCAGGACATGATAGACCAGTTGCGCCCC 
GGAATGACCCGACGCCAAGTGCGGTTTATCATGGGCAACCCGCTGATCGTCGATACCTTCCACGCCAATCGT 
TGGGACTACCTCTACAGCATCCAGCCGGGCGGCGGTCGTCGCCAGCAGGAGCGCGTCAGCCTGTTCTTCAAC 
GACAGCGACCAACTGGCCGGCCTGAACGGCGACTTCATGCCCGGCGTCAGCCGCGACGAAGCGATCCTCGGC 
AAGGAAGGCAGCACCACCGTCACCCAGCCGGCCGACCAGCAGAAACCGGAAGAGCAGAAGGAAGAGCCGCCG 
AAACCGGGCTCCACCCTGGAACAGCTCCAGCGCGAAGTGGACGAGGCCCAGCCGGTACCGGTTCCGACCCCC 
GAACCTTTGGACCCCAGCCCGCAATGA