ViewGene
Locus Name:
GeneID:
Location:

GeneID:4111
TrivialName: PA14_14660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14660
PAO1 Ortholog Locus:PA3819
Sequence Length:549
Protein Length:182
Start: 1250522
Stop: 1251070
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07206.1|AE004799_12 (AE004799) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 181/182 (99%), Positives = 182/182 (100%)
Sequence:
GTGAACAAGTCGATGCTCGTCGGGGCCGTTCTGGGTGCCGTAGGCGTGACCGCAGGTGGCGCGGTAGCCACC
TATAGCCTGGTGGATCGCGGTCCCAACTACGCCGAGGTCGTCGCTGTCCAGCCGGTCAAGGAAACCATCAAG
ACGCCGCGCCAGGTCTGCAAGGACGTGGCCGTGACCCGCCAGCGTCCGGTCAAGGACCAGCACCAGATCGCC
GGTACCGCCATCGGTGCGGTGGTCGGCGGCTTGCTGGGCAACCAGATCGGCGGCGGTACCGGCAAGAAGATC
GCCACCGTGGCCGGCGCCGTCGGCGGCGGCTACGCCGGCAACAAGGTGCAGGAAGGCATGCAGGAGCGTGAC
ACCTACACCACAACCGAAACCCGCTGCAGCACCGTGCATGACAGCAGCGAGAAGGTCGTCGGCTATGACGTG
AAGTACATGCTCGACGGCAAGGCCGGGCAGATCCGCATGGAGCGCGATCCGGGCAGCCAGATCCCGGTCGAC
AAGAATGGCCGGCTGATCCTCAGCCAGGGCGAAACGCTGCGCTGA
Translation:
MNKSMLVGAVLGAVGVTAGGAVATYSLVDRGPNYAEVVAVQPVKETIKTPRQVCKDVAVTRQRPVKDQHQIA
GTAIGAVVGGLLGNQIGGGTGKKIATVAGAVGGGYAGNKVQEGMQERDTYTTTETRCSTVHDSSEKVVGYDV
KYMLDGKAGQIRMERDPGSQIPVDKNGRLILSQGETLR*
AnnotationID:4118GeneID:4111
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 14:02:48
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane protein
Cell Localization:()
Synonyms:ycfJ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3134
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL20141.1| (AE008752) putative outer membrane lipoprotein [Salmonella
           typhimurium LT2]
          Length = 179

 Score =  225 bits (574), Expect = 9e-59
 Identities = 100/176 (56%), Positives = 140/176 (79%)

>gb|AAO69333.1| (AE016839) putative secreted protein [Salmonella enterica subsp.
           enterica serovar Typhi Ty2]
          Length = 179

 Score =  225 bits (574), Expect = 9e-59
 Identities = 100/176 (56%), Positives = 140/176 (79%)






 
Structural Features:
COG3134, Predicted outer membrane lipoprotein
CD-Length = 179 residues, 100.0% aligned
Score =  258 bits (661), Expect = 4e-70
Identities = 106/179 (59%), Positives = 142/179 (79%)







   
Genomic Context:






   
Comment:


















    ReferenceID:15020




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25367




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31737




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4111_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4111
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6361
                           PA3819_tr
                           translation of PA3819
                           182
                           99.45
                           99.99
                           0
                           919.0
     

     
     
174678
                           gb|AAG07206.1|AE004799_12
                           (AE004799) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           182
                           98.90
                           99.99
                           0
                           916.0
     

     
     
174680
                           gb|AAN66462.1|AE016275_7
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           183
                           75.40
                           89.07
                           4
                           733.0
     

     
     
174681
                           gb|AAO54938.1|
                           (AE016860) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           182
                           74.72
                           85.71
                           3
                           718.0
     

     
     
174679
                           gb|AAM75415.1|
                           (AY115588) conserved hypothetical protein PA3819 [Pseudomonas putida]
                           192
                           72.91
                           85.93
                           10
                           751.0
     

     






      

          
GC ORFID: 47113How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3819Glimmer Score: 

          
Start: 3703416Stop: 3702868

          
Length: 549


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3819 translation of PA3819Homolog Bit Score 358.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4512 (ORF: BLASTX 290.0), t_PA3819 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAACAAGTCGATGCTCGTCGGGGCCGTTCTGGGTGCCGTAGGCGTGACCGCAGGTGGCGCGGTAGCCACC 
TATAGCCTGGTGGATCGCGGTCCCAACTACGCCGAGGTCGTCGCTGTCCAGCCGGTCAAGGAAACCATCAAG 
ACGCCGCGCCAGGTCTGCAAGGACGTGGCCGTGACCCGCCAGCGTCCGGTCAAGGACCAGCACCAGATCGCC 
GGTACCGCCATCGGTGCGGTGGTCGGCGGCTTGCTGGGCAACCAGATCGGCGGCGGTACCGGCAAGAAGATC 
GCCACCGTGGCCGGCGCCGTCGGCGGCGGCTACGCCGGCAACAAGGTGCAGGAAGGCATGCAGGAGCGTGAC 
ACCTACACCACAACCGAAACCCGCTGCAGCACCGTGCATGACAGCAGCGAGAAGGTCGTCGGCTATGACGTG 
AAGTACATGCTCGACGGCAAGGCCGGGCAGATCCGCATGGAGCGCGATCCGGGCAGCCAGATCCCGGTCGAC 
AAGAATGGCCGGCTGATCCTCAGCCAGGGCGAAACGCTGCGCTGA