ViewGene
Locus Name:
GeneID:
Location:

GeneID:4110
TrivialName: PA14_24900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24900
PAO1 Ortholog Locus:PA3029
Sequence Length:540
Protein Length:179
Start: 2175335
Stop: 2175874
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06417.1|AE004728_3 (AE004728) molybdopterin biosynthetic protein B2 [Pseudomonas aeruginosa PAO1]
Identities = 179/179 (100%), Positives = 179/179 (100%)
Sequence:
ATGAGCCACAAGGCCGAAACGGCATTCGTGCCGTTGAACATCGCCGTCCTGACCGTCAGCGATACCCGTACC
CTGGAAACCGATACCTCAGGCCAGTTGTTCGTCGACCGCCTGACCGAGGCCGGGCACAACCTGGCCGCTCGC
GTGCTGCTGAAGGATGACCTGTACCGGATCCGCGCACAGGTCGCGACCTGGATCGCCGAGGACAGCGTGCAG
GTCGTGCTGATCACCGGCGGCACCGGTTTCACCGGCCGCGACAGCACCCCGGAAGCGGTGGCCTGCCTGCTG
GACAAGCAGGTGGACGGCTTCGGCGAGCTGTTCCGGCAGATTTCGCTGGCCGACATCGGTACCTCCACCATC
CAGTCGCGGGCCCTGGCCGGGCTTTCCAACGGTACCCTGGTCTGTTGCCTGCCGGGCTCCACCAATGCCTGC
CGCACTGCCTGGGAAGGCATCCTCGTCGAGCAACTGGACGCCCGTCATCGCCCGTGCAACTTCGTCCCGCAC
CTGAAACAGGCGGCGCCCTGCGAGAGCCGCGGGTGA
Translation:
MSHKAETAFVPLNIAVLTVSDTRTLETDTSGQLFVDRLTEAGHNLAARVLLKDDLYRIRAQVATWIAEDSVQ
VVLITGGTGFTGRDSTPEAVACLLDKQVDGFGELFRQISLADIGTSTIQSRALAGLSNGTLVCCLPGSTNAC
RTAWEGILVEQLDARHRPCNFVPHLKQAAPCESRG*
AnnotationID:4117GeneID:4110
AnnotatorUID: diggins
Modification Date/Time: 2004-11-25 08:08:00
Gene Name:moaB2
Confidence Code:2
GeneProduct:molybdopterin biosynthetic protein B2
Cell Localization:()
Synonyms:moaB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:molybdenum cofactor biosynthesis protein B
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55863.1| (AE016864) molybdenum cofactor biosynthesis protein B [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 179

 Score =  316 bits (810), Expect = 4e-86
 Identities = 156/179 (87%), Positives = 165/179 (92%)

>gb|AAN67735.1|AE016404_10 (AE016782) molybdenum cofactor biosynthesis protein B [Pseudomonas
           putida KT2440]
          Length = 179

 Score =  314 bits (804), Expect = 2e-85
 Identities = 154/179 (86%), Positives = 166/179 (92%)

>dbj|BAC60358.1| (AP005080) molybdenum cofactor biosynthesis protein B [Vibrio
           parahaemolyticus]
          Length = 170

 Score =  219 bits (559), Expect = 5e-57
 Identities = 104/169 (61%), Positives = 133/169 (78%), Gaps = 1/169 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8222




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25365




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36019




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4110_cdd.html


    		




 
URL:

















    ReferenceID:36487




  
Author/Investigator(s):
        Rivers SL, McNairn E, Blasco F, Giordano G, Boxer DH.





  
Title:
        Molecular genetic analysis of the moa operon of Escherichia coli K-12 required for molybdenum cofactor biosynthesis.




  
PubMed:
        8361352


MedLine:
        




    
Source:
Mol Microbiol. 1993 Jun;8(6):1071-81.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=93368423&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:4110
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6359
                           PA3029_tr
                           translation of PA3029
                           179
                           99.99
                           99.99
                           0
                           920.0
     

     
     
174625
                           gb|AAG06417.1|AE004728_3
                           (AE004728) molybdopterin biosynthetic protein B2 [Pseudomonas aeruginosa PAO1]
                           179
                           99.99
                           99.99
                           0
                           920.0
     

     
     
174626
                           gb|AAO55863.1|
                           (AE016864) molybdenum cofactor biosynthesis protein B [Pseudomonas syringae pv. tomato str. DC3000]
                           179
                           87.15
                           92.17
                           0
                           810.0
     

     
     
174627
                           gb|AAN67735.1|AE016404_10
                           (AE016782) molybdenum cofactor biosynthesis protein B [Pseudomonas putida KT2440]
                           179
                           86.03
                           92.73
                           0
                           804.0
     

     
     
174628
                           gb|AAN70173.1|AE016656_8
                           (AE016791) molybdenum cofactor biosynthesis protein B [Pseudomonas putida KT2440]
                           179
                           73.18
                           81.00
                           7
                           688.0
     

     






      

          
GC ORFID: 47112How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3029Glimmer Score: 

          
Start: 2778593Stop: 2778054

          
Length: 540


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3029 translation of PA3029Homolog Bit Score 358.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1104 (ORF: BLASTX 312.0), t_PA3915 (ORF: BLASTX 244.0), t_PA3029 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCACAAGGCCGAAACGGCATTCGTGCCGTTGAACATCGCCGTCCTGACCGTCAGCGATACCCGTACC 
CTGGAAACCGATACCTCAGGCCAGTTGTTCGTCGACCGCCTGACCGAGGCCGGGCACAACCTGGCCGCTCGC 
GTGCTGCTGAAGGATGACCTGTACCGGATCCGCGCACAGGTCGCGACCTGGATCGCCGAGGACAGCGTGCAG 
GTCGTGCTGATCACCGGCGGCACCGGTTTCACCGGCCGCGACAGCACCCCGGAAGCGGTGGCCTGCCTGCTG 
GACAAGCAGGTGGACGGCTTCGGCGAGCTGTTCCGGCAGATTTCGCTGGCCGACATCGGTACCTCCACCATC 
CAGTCGCGGGCCCTGGCCGGGCTTTCCAACGGTACCCTGGTCTGTTGCCTGCCGGGCTCCACCAATGCCTGC 
CGCACTGCCTGGGAAGGCATCCTCGTCGAGCAACTGGACGCCCGTCATCGCCCGTGCAACTTCGTCCCGCAC 
CTGAAACAGGCGGCGCCCTGCGAGAGCCGCGGGTGA