ViewGene

Locus Name:
GeneID:
Location:

GeneID: 411

TrivialName: PA14_35690

AnnotatorUID: ericdeziel

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_35690

PAO1 Ortholog Locus: PA2235

Sequence Length: 1989

Protein Length: 662

Start: 3174547

Stop: 3172559

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05623.1|AE004649_14 (AE004649) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 661/662 (99%), Positives = 662/662 (100%) to PA2235 of PAO1.

Sequence:

ATGATAGAAATTCGTTCCTTGCGTGATCTGTTGCGCCTGCTGTTCATCTACCAGCGCGAGTTCAAGCTGGCG
GCCCTCAGCGCGGTGGTGATCATCGTCCTCGGCGCCTTCCTGCTGCCGGCCAAGTACGAGTCCAACGCACGC
CTGCTGGTCAAGCCGGGTCGTGACTCGACCCTGCCGATCGAGATCAGCAACCGCCAGGCACTGGTGATGCCG
AGCACCCAGCGCGACCCTATCGTCGACGAAGAACGCCTGCTCACCGGCCGGCCGATCGTCCGCCAGGTGGCC
GAGCGCTACCTCGAGGTGCTGGCCAACCGGCCGCCGCCGGAGGGCCTGTGGAAGCGCACCAAGTTCTATGTG
AAGAAGGCCATCGGCGCGGTGTTCGACGGGATTCGCGTGACCCTGGAAACCTTCGGCGTGATCGAGGAAACC
ACCGCGGTCGAGCGCCTGGCCAAGGACCTGGAGAAGAAATTCGAGGTCACCCATGCGGCCGGCTCGACGGTG
ATGGAGATCAGCTTCACCTGGAGCGAGCCGGAAGTCGCCCAGGAAGTGGTCAAGGCCTGGATCGAGATCTAC
ATGGAAGAGCGCACCCAGGCGCTCGGCCGCAAGAGCCTGTACGCCTTCTACGAGGCGCAGACCGCCGACAGC
GCGGCGCAGATCAAGAGCTACAAGGCGCAGATCCTCAAGCACCTCAACGAGATCGGCGCATCCAGCATCGAG
GACCGCCTGCAGGACCTGTCCGAGCGGATCAACGTGCTGCGCGGCGAGCGTTTCAACTCGATCCGCCTGATC
GCCTCCTCCGACAGCGCCCTGGAATCCACCCGCCAGCAACTCAAGGGGCTGCCCAGGGAGATCGTCACGGTG
CGGCAGATCGCGCTGAACCCGGCGCAGCAGGACCTGCGCCGGCTGCTCAACCAGAAGCGCCTGGAACGCGCC
GACATGATGCGCACCTACACCGACGACGCGCCGCCGGTGAAGGCCCTGGACGCCTCGATCCGTGCCCTGGAG
AAAGAAGTCCAGGACGAAGGCGCCACCGTGCAGAGTTCCGAGGACCGCGCGCCGAACACCCTGACCACTCAC
CTGGAACGGGTCCTGCTGGACGAGACCAGCAACAACGCGGCCCTGCGCACCCAGCTCGCGGAGCAGGAAAAG
CAGCTCGCCGAACTCGAGGCGCAACGGCGCGAAGCGCTGGACATCGAGCCGACCCTGGCGCGCCTGCAGCGC
GAGCTGAACGCCACCGAGCGCAACTACGCGCTGTACGTCGACAGCCTGGAGAAATCGCGGATCGACCGTGAA
CTGGACAAGAGCCAGATCAGCAACATCTCGGTGATCGAGGAAGCCACCTACAACCCCGGGCGGATCTTCCCG
AAAACCCTGCTGATGCTGTTCCTCGCCGTGCCCTTCGGTCTCGCCGTCGGCCTGCTGGTGGTCTATCTCTGC
TACCTGCTCGACCAGCGCATCCACGACGGCGGCCTGGTCGAGGAGAAATTCGGCCTGCCGCTGTGGACCACC
CTGCCGGAGCTGAGCAACAGCACCGCGGAGAGCAGCAACGCCTTCACCGCCAGCATCTACCGGCTGTACGGG
CTGCTGCCCTACGCGCGCATCGAGGAAAAGGGCCTGACCCTGGGCCTGACCTCGGCGCGCCACGGTGAAGGC
GTGACCTTCATCATCGAGCAACTGCGCCGCCTGCTGGAGGAAAACGGCGTGCGCGTGCGGGTCGGCGGCGAA
CCGGCCCAGCCGGGCGAAGTGGTATTGCTCGACGCGCCGGCCCTGCTGGACAGCCGCGAGGCCTTCATCGCC
CTGCGCCGCGCCGACCTGATCGCCCTGGTGGTGGAGGCGCAGAAGAGCACCGTGCCGGTGGTCGAGCATGCG
CTGACCATCCTCACCACGGCGTTCGGCAAGGTCGACGGGATCATCATCAACCGGCGCCGCTTCGAGGTGCCG
AGCAAGGTCCTGCAGACCATCGCCCGCTACCGGAGCGCGTTCTGA

Translation:

MIEIRSLRDLLRLLFIYQREFKLAALSAVVIIVLGAFLLPAKYESNARLLVKPGRDSTLPIEISNRQALVMP
STQRDPIVDEERLLTGRPIVRQVAERYLEVLANRPPPEGLWKRTKFYVKKAIGAVFDGIRVTLETFGVIEET
TAVERLAKDLEKKFEVTHAAGSTVMEISFTWSEPEVAQEVVKAWIEIYMEERTQALGRKSLYAFYEAQTADS
AAQIKSYKAQILKHLNEIGASSIEDRLQDLSERINVLRGERFNSIRLIASSDSALESTRQQLKGLPREIVTV
RQIALNPAQQDLRRLLNQKRLERADMMRTYTDDAPPVKALDASIRALEKEVQDEGATVQSSEDRAPNTLTTH
LERVLLDETSNNAALRTQLAEQEKQLAELEAQRREALDIEPTLARLQRELNATERNYALYVDSLEKSRIDRE
LDKSQISNISVIEEATYNPGRIFPKTLLMLFLAVPFGLAVGLLVVYLCYLLDQRIHDGGLVEEKFGLPLWTT
LPELSNSTAESSNAFTASIYRLYGLLPYARIEEKGLTLGLTSARHGEGVTFIIEQLRRLLEENGVRVRVGGE
PAQPGEVVLLDAPALLDSREAFIALRRADLIALVVEAQKSTVPVVEHALTILTTAFGKVDGIIINRRRFEVP
SKVLQTIARYRSAF*

AnnotationID:420 GeneID:411

AnnotatorUID: danlee

Modification Date/Time: 2005-10-10 16:04:31

Gene Name: pslE

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms: PA2235

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG3206

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

gi|68345861|gb|AAY93467.1|  exopolysaccharide biosythesis protein [Pseudomonas fluorescens Pf-5]
     Length=664
     Score =  727 bits (1877),  Expect = 0.0
     Identities = 371/662 (56%), Positives = 501/662 (75%), Gaps = 2/662 (0%)

gi|63257240|gb|AAY38336.1|  Lipopolysaccharide biosynthesis [Pseudomonas syringae 
pv. syringae B728a]
     Length=663
     Score =  687 bits (1773),  Expect = 0.0
     Identities = 351/662 (53%), Positives = 486/662 (73%), Gaps = 3/662 (0%)

gi|71557478|gb|AAZ36689.1|  exopolysaccharide biosythesis protein [Pseudomonas syringae 
pv. phaseolicola 1448A]
     Length=663
     Score =  683 bits (1762),  Expect = 0.0
     Identities = 346/662 (52%), Positives = 488/662 (73%), Gaps = 3/662 (0%)

gi|28853941|gb|AAO57007.1|  exopolysaccharide biosythesis protein [Pseudomonas syringae 
pv. tomato str. DC3000]
     Length=663
     Score =  679 bits (1751),  Expect = 0.0
     Identities = 348/662 (52%), Positives = 482/662 (72%), Gaps = 3/662 (0%)

Structural Features:

COG3206, GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis 
[Cell envelope biogenesis, outer membrane].
             CD-Length = 458 residues,  93.9% aligned
             Score =  164 bits (417), Expect = 2e-41

Genomic Context:

Comment:

ReferenceID:825

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17967

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:411

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

697 PA2235_tr translation of PA2235 662 99.84 99.99 0 3259.0

31613 gb|AAG05623.1|AE004649_14 (AE004649) hypothetical protein PA2235 [Pseudomonas aeruginosa PAO1] 662 99.84 99.99 0 3259.0

31614 gb|AAO57007.1| (AE016868) exopolysaccharide biosythesis protein [Pseudomonas syringae pv. tomato str. DC3000] 664 52.40 72.59 3 1753.0

GC ORFID: `43413`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2235`	Glimmer Score:
Start: `1779369`	Stop: `1781357`
Length: `1989`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2235 translation of PA2235`	Homolog Bit Score `1259.0`
Other Homologs: `psyr_15may02_Scaffold6_revised_gene6837 (ORF: BLASTX 148.0), t_PA2235 (ORF: GLIMMER)`
GC ORF Sequence
ATGATAGAAATTCGTTCCTTGCGTGATCTGTTGCGCCTGCTGTTCATCTACCAGCGCGAGTTCAAGCTGGCG GCCCTCAGCGCGGTGGTGATCATCGTCCTCGGCGCCTTCCTGCTGCCGGCCAAGTACGAGTCCAACGCACGC CTGCTGGTCAAGCCGGGTCGTGACTCGACCCTGCCGATCGAGATCAGCAACCGCCAGGCACTGGTGATGCCG AGCACCCAGCGCGACCCTATCGTCGACGAAGAACGCCTGCTCACCGGCCGGCCGATCGTCCGCCAGGTGGCC GAGCGCTACCTCGAGGTGCTGGCCAACCGGCCGCCGCCGGAGGGCCTGTGGAAGCGCACCAAGTTCTATGTG AAGAAGGCCATCGGCGCGGTGTTCGACGGGATTCGCGTGACCCTGGAAACCTTCGGCGTGATCGAGGAAACC ACCGCGGTCGAGCGCCTGGCCAAGGACCTGGAGAAGAAATTCGAGGTCACCCATGCGGCCGGCTCGACGGTG ATGGAGATCAGCTTCACCTGGAGCGAGCCGGAAGTCGCCCAGGAAGTGGTCAAGGCCTGGATCGAGATCTAC ATGGAAGAGCGCACCCAGGCGCTCGGCCGCAAGAGCCTGTACGCCTTCTACGAGGCGCAGACCGCCGACAGC GCGGCGCAGATCAAGAGCTACAAGGCGCAGATCCTCAAGCACCTCAACGAGATCGGCGCATCCAGCATCGAG GACCGCCTGCAGGACCTGTCCGAGCGGATCAACGTGCTGCGCGGCGAGCGTTTCAACTCGATCCGCCTGATC GCCTCCTCCGACAGCGCCCTGGAATCCACCCGCCAGCAACTCAAGGGGCTGCCCAGGGAGATCGTCACGGTG CGGCAGATCGCGCTGAACCCGGCGCAGCAGGACCTGCGCCGGCTGCTCAACCAGAAGCGCCTGGAACGCGCC GACATGATGCGCACCTACACCGACGACGCGCCGCCGGTGAAGGCCCTGGACGCCTCGATCCGTGCCCTGGAG AAAGAAGTCCAGGACGAAGGCGCCACCGTGCAGAGTTCCGAGGACCGCGCGCCGAACACCCTGACCACTCAC CTGGAACGGGTCCTGCTGGACGAGACCAGCAACAACGCGGCCCTGCGCACCCAGCTCGCGGAGCAGGAAAAG CAGCTCGCCGAACTCGAGGCGCAACGGCGCGAAGCGCTGGACATCGAGCCGACCCTGGCGCGCCTGCAGCGC GAGCTGAACGCCACCGAGCGCAACTACGCGCTGTACGTCGACAGCCTGGAGAAATCGCGGATCGACCGTGAA CTGGACAAGAGCCAGATCAGCAACATCTCGGTGATCGAGGAAGCCACCTACAACCCCGGGCGGATCTTCCCG AAAACCCTGCTGATGCTGTTCCTCGCCGTGCCCTTCGGTCTCGCCGTCGGCCTGCTGGTGGTCTATCTCTGC TACCTGCTCGACCAGCGCATCCACGACGGCGGCCTGGTCGAGGAGAAATTCGGCCTGCCGCTGTGGACCACC CTGCCGGAGCTGAGCAACAGCACCGCGGAGAGCAGCAACGCCTTCACCGCCAGCATCTACCGGCTGTACGGG CTGCTGCCCTACGCGCGCATCGAGGAAAAGGGCCTGACCCTGGGCCTGACCTCGGCGCGCCACGGTGAAGGC GTGACCTTCATCATCGAGCAACTGCGCCGCCTGCTGGAGGAAAACGGCGTGCGCGTGCGGGTCGGCGGCGAA CCGGCCCAGCCGGGCGAAGTGGTATTGCTCGACGCGCCGGCCCTGCTGGACAGCCGCGAGGCCTTCATCGCC CTGCGCCGCGCCGACCTGATCGCCCTGGTGGTGGAGGCGCAGAAGAGCACCGTGCCGGTGGTCGAGCATGCG CTGACCATCCTCACCACGGCGTTCGGCAAGGTCGACGGGATCATCATCAACCGGCGCCGCTTCGAGGTGCCG AGCAAGGTCCTGCAGACCATCGCCCGCTACCGGAGCGCGTTCTGA