ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4109

TrivialName: PA14_31390

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_31390

PAO1 Ortholog Locus: PA2562

Sequence Length: 513

Protein Length: 170

Start: 2730150

Stop: 2730662

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05950.1|AE004684_5 (AE004684) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 167/170 (98%), Positives = 168/170 (98%)

Sequence:

ATGTTCAACACTCGTTCTGTGCTCGCGCTGGTCGTGAGCCTGTCTCTGCTCGGCGGTACGCCTGCCGTCCTG
GCCGACCCGGGCAATGGCAAGGGTAACCCGCACGGTAACCAGATGGACGGCGGAAAGGGTAACAAGGGCAAC
AAAGGCAACCAGGGTGGCCACGACAACCATGGCGGCCCCGGCAACAAGGGCGGCGGCGCCGGCCAGAAGGGC
AACGGCGGCGGCAACTGGGACTCGGGACCGCGTATCGACGTCGGCGGGGTACGGGTGATCCTCGGCGACAAC
CGCGGCTACTGGAACCCGGGGCCGGCCCTGCCGCCCGGCATCCAGAAGAACCTGGTGCGCGGCAAGCCACTG
CCGCCCGGCATCGCCAAGAAACTCGACGGCCGCCTGCTAGGCCGGCTGCCGCACTACGACGGCTACGAGTGG
ATGCAGGCCGGCACCGACCTGCTGCTGGTGGCGGTGGCGACCGGGCTGATCTACGAAGTGCTGGACAACGCT
CTCGACTGA

Translation:

MFNTRSVLALVVSLSLLGGTPAVLADPGNGKGNPHGNQMDGGKGNKGNKGNQGGHDNHGGPGNKGGGAGQKG
NGGGNWDSGPRIDVGGVRVILGDNRGYWNPGPALPPGIQKNLVRGKPLPPGIAKKLDGRLLGRLPHYDGYEW
MQAGTDLLLVAVATGLIYEVLDNALD*

AnnotationID:4116 GeneID:4109

AnnotatorUID: diggins

Modification Date/Time: 2005-03-07 06:06:42

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA2562

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:8220

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:25363

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:4109

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6358 PA2562_tr translation of PA2562 170 98.23 98.82 0 919.0

174621 gb|AAG05950.1|AE004684_5 (AE004684) hypothetical protein PA2562 [Pseudomonas aeruginosa PAO1] 170 98.23 98.82 0 919.0

174622 gb|AAN68135.1|AE016445_5 (AE016783) conserved hypothetical protein [Pseudomonas putida KT2440] 171 60.81 69.00 15 496.0

174623 gb|AAL22620.1| (AE008875) putative inner membrane protein [Salmonella typhimurium LT2] 177 42.37 55.36 25 290.0

174624 gb|AAD16958.1| (AF106566) CigR [Salmonella typhimurium] 177 42.37 55.36 25 290.0

GC ORFID: `47111`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2562`	Glimmer Score:
Start: `2223776`	Stop: `2223264`
Length: `513`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2562 translation of PA2562`	Homolog Bit Score `358.0`
Other Homologs: `psyr_15may02_Scaffold2_revised_gene4089 (ORF: BLASTX 111.0), t_PA2562 (ORF: GLIMMER)`
GC ORF Sequence
ATGTTCAACACTCGTTCTGTGCTCGCGCTGGTCGTGAGCCTGTCTCTGCTCGGCGGTACGCCTGCCGTCCTG GCCGACCCGGGCAATGGCAAGGGTAACCCGCACGGTAACCAGATGGACGGCGGAAAGGGTAACAAGGGCAAC AAAGGCAACCAGGGTGGCCACGACAACCATGGCGGCCCCGGCAACAAGGGCGGCGGCGCCGGCCAGAAGGGC AACGGCGGCGGCAACTGGGACTCGGGACCGCGTATCGACGTCGGCGGGGTACGGGTGATCCTCGGCGACAAC CGCGGCTACTGGAACCCGGGGCCGGCCCTGCCGCCCGGCATCCAGAAGAACCTGGTGCGCGGCAAGCCACTG CCGCCCGGCATCGCCAAGAAACTCGACGGCCGCCTGCTAGGCCGGCTGCCGCACTACGACGGCTACGAGTGG ATGCAGGCCGGCACCGACCTGCTGCTGGTGGCGGTGGCGACCGGGCTGATCTACGAAGTGCTGGACAACGCT CTCGACTGA