ViewGene

Locus Name:
GeneID:
Location:

GeneID:4107
TrivialName: PA14_44890
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44890
PAO1 Ortholog Locus:PA1512
Sequence Length:519
Protein Length:172
Start: 4000090
Stop: 4000608
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08652.1|AE004939_4 (AE004939) secreted protein Hcp [Pseudomonas aeruginosa PAO1]
Identities = 172/172 (100%), Positives = 172/172 (100%)
Sequence:
ATGGCAACCCCCGCCTATATGTCCATCACCGGCACCAAGCAGGGCCTGATCACCGCCGGCGCCTTCACCGAG
GACTCGGTCGGCAACACCTATCAGGAAGGCCACGAGGACCAGGTGATGGTCCAGGGCTTCAACCACGAAGTG
ATCATCCCGCGTGACCCGCAGTCCGGCCAGCCGACCGGCCAGCGCGTGCACAAGCCTGTGGTCATCACCAAG
GTCTTCGACAAGGCCTCGCCGCTGCTGCTGGCCGCCCTGACCTCCGGCGAGCGCCTGACCAAGGTCGAGATC
CAGTGGTACCGCACCTCCGCCGCCGGCACCCAGGAGCACTACTACACCACCGTCCTGGAAGACGCGATCATC
GTCGACATCAAGGACTACATGCACAACTGCCAGGACCCGGGCAACGCCCACTTCACCCACCTGGAAGACGTG
CACTTCACCTACCGCAAGATCACCTGGACCCACGAAGTCTCCGGCACCTCCGGCTCCGACGACTGGCGCTCG
CCGGTGGCAGGGTGA
Translation:
MATPAYMSITGTKQGLITAGAFTEDSVGNTYQEGHEDQVMVQGFNHEVIIPRDPQSGQPTGQRVHKPVVITK
VFDKASPLLLAALTSGERLTKVEIQWYRTSAAGTQEHYYTTVLEDAIIVDIKDYMHNCQDPGNAHFTHLEDV
HFTYRKITWTHEVSGTSGSDDWRSPVAG*
AnnotationID:4114GeneID:4107
AnnotatorUID: danlee
Modification Date/Time: 2005-10-10 12:12:59
Gene Name:hcpA
Confidence Code:2
GeneProduct:secreted protein Hcp
Cell Localization:()
Synonyms:hcpB,hcpC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:hemolysin co-regulated protein
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:3.5.2.6
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58857.1| (AE016875) secreted protein Hcp [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 172

 Score =  337 bits (865), Expect = 1e-92
 Identities = 161/172 (93%), Positives = 166/172 (96%)

>gb|AAN69671.1|AE016602_1 (AE016789) hcp protein [Pseudomonas putida KT2440]
          Length = 171

 Score =  215 bits (547), Expect = 1e-55
 Identities = 99/171 (57%), Positives = 122/171 (71%)

>gb|AAM83631.1|AE013605_4 (AE013605) hemolysin co-regulated protein [Yersinia pestis KIM]
          Length = 172

 Score =  214 bits (546), Expect = 1e-55
 Identities = 102/170 (60%), Positives = 123/170 (72%)

Structural Features:
Genomic Context:
Comment:
PA14 has 4 copies of Hcp genes (PAO1 has 3 copies).
ReferenceID:8216
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25359
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37323
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4107_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4107

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6352 PA5267_tr translation of PA5267 172 99.99 99.99 0 919.0
6353 PA1512_tr translation of PA1512 172 99.99 99.99 0 919.0
6354 PA0263_tr translation of PA0263 172 99.99 99.99 0 919.0
174571 gb|AAG08652.1|AE004939_4 (AE004939) secreted protein Hcp [Pseudomonas aeruginosa PAO1] 172 99.99 99.99 0 919.0
174572 gb|AAG04901.1|AE004580_1 (AE004580) secreted protein Hcp [Pseudomonas aeruginosa PAO1] 172 99.99 99.99 0 919.0
GC ORFID: 47109How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5267Glimmer Score:
Start: 953819Stop: 953301
Length: 519
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5267 translation of PA5267Homolog Bit Score 358.0
Other Homologs: t_PA1512 (ORF: BLASTX 358.0), t_PA0263 (ORF: BLASTX 358.0), t_PA5267 (ORF: GLIMMER)
GC ORF Sequence
ATGGCAACCCCCGCCTATATGTCCATCACCGGCACCAAGCAGGGCCTGATCACCGCCGGCGCCTTCACCGAG
GACTCGGTCGGCAACACCTATCAGGAAGGCCACGAGGACCAGGTGATGGTCCAGGGCTTCAACCACGAAGTG
ATCATCCCGCGTGACCCGCAGTCCGGCCAGCCGACCGGCCAGCGCGTGCACAAGCCTGTGGTCATCACCAAG
GTCTTCGACAAGGCCTCGCCGCTGCTGCTGGCCGCCCTGACCTCCGGCGAGCGCCTGACCAAGGTCGAGATC
CAGTGGTACCGCACCTCCGCCGCCGGCACCCAGGAGCACTACTACACCACCGTCCTGGAAGACGCGATCATC
GTCGACATCAAGGACTACATGCACAACTGCCAGGACCCGGGCAACGCCCACTTCACCCACCTGGAAGACGTG
CACTTCACCTACCGCAAGATCACCTGGACCCACGAAGTCTCCGGCACCTCCGGCTCCGACGACTGGCGCTCG
CCGGTGGCAGGGTGA