ViewGene
Locus Name:
GeneID:
Location:

GeneID:4106
TrivialName: PA14_06700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06700
PAO1 Ortholog Locus:PA0514
Sequence Length:525
Protein Length:174
Start: 586017
Stop: 585493
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03903.1|AE004488_7 (AE004488) heme d1 biosynthesis protein NirL [Pseudomonas aeruginosa PAO1]
Identities = 173/174 (99%), Positives = 173/174 (99%)
Sequence:
ATGAACCCCGTCGAACCCCTCGCCGCGCCGCAGCGGCAACACCTGCGCTACCTGCTGGAACAGGGCCTGCCG
CTGGCCAGCCGGCCCTACCGGGTGCTCGCCGAACGCATCGGCGCCGGCGAAGACGAAGTGCTGGAACAGGTC
CGCCGCTGGGACGAAGACGGCCTGTTCCGCCGCTTCGGAGTGATCCTCCACCACCGCGCCCTGGGCTATACC
GCCAACGCCATGCTGGTGCTGGACGTCGCCGACGCGGAGGTCGACGTCGTCGGCCGCGCCCTCGCCCACGAA
ACGATCGTCTCGCTCTGTTACCGCCGCCCGCGTCGCCTGCCGATGTGGCCATACAACCTGTTTTGCATGATC
CACGGCCGCGAGCGCGGCGAAGTGGAACGCCAGATCGAGGCCCTGCTGGAGCGCCACGCCCTGCGCCAGACA
CCGCACCGCTGGCTGTTCAGCCTGCGCGCCTACAAGCAGTGCGGCGGCCGCTACACCGCGCCGCCGGCCGAC
CTGGAGCGCCGCCATGGATGA
Translation:
MNPVEPLAAPQRQHLRYLLEQGLPLASRPYRVLAERIGAGEDEVLEQVRRWDEDGLFRRFGVILHHRALGYT
ANAMLVLDVADAEVDVVGRALAHETIVSLCYRRPRRLPMWPYNLFCMIHGRERGEVERQIEALLERHALRQT
PHRWLFSLRAYKQCGGRYTAPPADLERRHG*
AnnotationID:4113GeneID:4106
AnnotatorUID: diggins
Modification Date/Time: 2004-08-15 15:03:57
Gene Name:nirL
Confidence Code:1
GeneProduct:heme d1 biosynthesis protein NirL
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):transcriptional regulator
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAA90580.1| (Z50198) NirL protein [Pseudomonas stutzeri]
          Length = 170

 Score =  205 bits (521), Expect = 1e-52
 Identities = 95/155 (61%), Positives = 121/155 (78%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8214




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25357




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33822




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4106_cdd.html


    		




 
URL:

















    ReferenceID:35304




  
Author/Investigator(s):
        Kawasaki S, Arai H, Kodama T, Igarashi Y.





  
Title:
        Gene cluster for dissimilatory nitrite reductase (nir) from Pseudomonas aeruginosa: sequencing and identification of a locus for heme d1 biosynthesis.




  
PubMed:
        8982003


MedLine:
        




    
Source:
J Bacteriol. 1997 Jan;179(1):235-42.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8982003









           
Homologs By Global Alignment 

           

       



     
Gene ID:4106
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6350
                           PA0514_tr
                           translation of PA0514
                           174
                           99.42
                           99.42
                           0
                           922.0
     

     
     
174563
                           gb|AAG03903.1|AE004488_7
                           (AE004488) heme d1 biosynthesis protein NirL [Pseudomonas aeruginosa PAO1]
                           174
                           99.42
                           99.42
                           0
                           922.0
     

     
     
174564
                           dbj|BAA12678.1|
                           (D84475) NirL [Pseudomonas aeruginosa]
                           174
                           99.42
                           99.42
                           0
                           922.0
     

     
     
174565
                           emb|CAA90580.1|
                           (Z50198) NirL protein [Pseudomonas stutzeri]
                           174
                           58.62
                           74.13
                           4
                           512.0
     

     
     
174570
                           emb|CAA90582.1|
                           (Z50198) NirH protein [Pseudomonas stutzeri]
                           181
                           37.56
                           50.27
                           20
                           254.0
     

     






      

          
GC ORFID: 47108How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0514Glimmer Score: 

          
Start: 6387359Stop: 6386835

          
Length: 525


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0514 translation of PA0514Homolog Bit Score 359.0

          
Other Homologs:  t_PA0512 (ORF: BLASTX 103.0), t_PA0514 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCCCGTCGAACCCCTCGCCGCGCCGCAGCGGCAACACCTGCGCTACCTGCTGGAACAGGGCCTGCCG 
CTGGCCAGCCGGCCCTACCGGGTGCTCGCCGAACGCATCGGCGCCGGCGAAGACGAAGTGCTGGAACAGGTC 
CGCCGCTGGGACGAAGACGGCCTGTTCCGCCGCTTCGGAGTGATCCTCCACCACCGCGCCCTGGGCTATACC 
GCCAACGCCATGCTGGTGCTGGACGTCGCCGACGCGGAGGTCGACGTCGTCGGCCGCGCCCTCGCCCACGAA 
ACGATCGTCTCGCTCTGTTACCGCCGCCCGCGTCGCCTGCCGATGTGGCCATACAACCTGTTTTGCATGATC 
CACGGCCGCGAGCGCGGCGAAGTGGAACGCCAGATCGAGGCCCTGCTGGAGCGCCACGCCCTGCGCCAGACA 
CCGCACCGCTGGCTGTTCAGCCTGCGCGCCTACAAGCAGTGCGGCGGCCGCTACACCGCGCCGCCGGCCGAC 
CTGGAGCGCCGCCATGGATGA