ViewGene
Locus Name:
GeneID:
Location:

GeneID:4105
TrivialName: PA14_04060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04060
PAO1 Ortholog Locus:PA0311
Sequence Length:555
Protein Length:184
Start: 366309
Stop: 365755
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03700.1|AE004469_5 (AE004469) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 184/184 (100%), Positives = 184/184 (100%)
Sequence:
ATGCTCCCGACCCGCTCGCTTCTACCGTTTTTCCTGGCCCCCGCGCTGCTCGCCAGCGCTGCCAGCCAGGCG
GCCATGGAGGCCCTGGACAACGACAGTCTCAGCCAGGTCACCGGCCAGGCCGGCATCAGCCTGCGCCTGGAC
CTGCGCGCCGGCGCGGCCAGGGTCGCCTGGGTGGACGACGGCGGCAGCCTCTCGCTGCGCAACCTGGTGATC
GACAACGGCTGCGTGAAGGCCGGCGACTGCCCGGACGGGCGCGGCGGCAACATCCCCCTGGGCGCCGCCCAG
CTCGGCCTGAGCCTGCCGATCTTCGGCGTCGAGCAGCCGACCCTGGCACTGGACGTGACCACCGGCAGCGGC
GGCGGGCAGCAACTGGCGATCAGCCTGCCGGACCTCGCCACCATCAACGACCAGTTGATCGCCAGCGGCCTG
CCGGCGCAGCGCATCCGCCTGCGGGTGGCCAGCGACCTGTACATCGGCGACAACTCGATCGGCCGCATCGAA
CTGCGCGACATCACCGACCTGCGCGGCACGATCAAGGTCTGGGGTCACTGA
Translation:
MLPTRSLLPFFLAPALLASAASQAAMEALDNDSLSQVTGQAGISLRLDLRAGAARVAWVDDGGSLSLRNLVI
DNGCVKAGDCPDGRGGNIPLGAAQLGLSLPIFGVEQPTLALDVTTGSGGGQQLAISLPDLATINDQLIASGL
PAQRIRLRVASDLYIGDNSIGRIELRDITDLRGTIKVWGH*
AnnotationID:4112GeneID:4105
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 08:08:47
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0311
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8212




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25355




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4105
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6349
                           PA0311_tr
                           translation of PA0311
                           184
                           99.99
                           99.99
                           0
                           922.0
     

     
     
174562
                           gb|AAG03700.1|AE004469_5
                           (AE004469) hypothetical protein PA0311 [Pseudomonas aeruginosa PAO1]
                           184
                           99.99
                           99.99
                           0
                           922.0
     

     






      

          
GC ORFID: 47107How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0311Glimmer Score: 

          
Start: 6167651Stop: 6167097

          
Length: 555


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0311 translation of PA0311Homolog Bit Score 359.0

          
Other Homologs:  t_PA0311 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCCCGACCCGCTCGCTTCTACCGTTTTTCCTGGCCCCCGCGCTGCTCGCCAGCGCTGCCAGCCAGGCG 
GCCATGGAGGCCCTGGACAACGACAGTCTCAGCCAGGTCACCGGCCAGGCCGGCATCAGCCTGCGCCTGGAC 
CTGCGCGCCGGCGCGGCCAGGGTCGCCTGGGTGGACGACGGCGGCAGCCTCTCGCTGCGCAACCTGGTGATC 
GACAACGGCTGCGTGAAGGCCGGCGACTGCCCGGACGGGCGCGGCGGCAACATCCCCCTGGGCGCCGCCCAG 
CTCGGCCTGAGCCTGCCGATCTTCGGCGTCGAGCAGCCGACCCTGGCACTGGACGTGACCACCGGCAGCGGC 
GGCGGGCAGCAACTGGCGATCAGCCTGCCGGACCTCGCCACCATCAACGACCAGTTGATCGCCAGCGGCCTG 
CCGGCGCAGCGCATCCGCCTGCGGGTGGCCAGCGACCTGTACATCGGCGACAACTCGATCGGCCGCATCGAA 
CTGCGCGACATCACCGACCTGCGCGGCACGATCAAGGTCTGGGGTCACTGA