ViewGene
Locus Name:
GeneID:
Location:

GeneID:4104
TrivialName: PA14_00660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00660
PAO1 Ortholog Locus:PA0054
Sequence Length:549
Protein Length:182
Start: 67735
Stop: 67187
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03444.1|AE004445_5 (AE004445) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 180/182 (98%), Positives = 180/182 (98%)
Sequence:
ATGGATCGGAAAACCCTCGACGACACCAGCAAGTTCCTCAGCTATGTCCTTCGCCACCAGCCCGAGGCCATC
GGCCTGAAGCTGGACGGCGAAGGCTGGGCCGACATCGACGCCCTGATCGCCGGCGCGGCGCGGGACGGCCGC
GCCCTCGACCGCGCGCTGCTCGGCGCGGTGGTCGAGAACAACGACAAGAAGCGCTTCGCCCTCTCCGCCGAT
GGCCAGCGCATCCGCGCCGTGCAAGGCCACTCGCATGCCGCGGTGGCCATCGCCTACGCCCCCGCGGTCCCG
CCCGCAGTGCTCTACCACGGCACCGCCAGCCGCTTCCTCGACTCCATCCGCGAGCGCGGCCTGGTCCCCGGC
AGCCGCCACCACGTCCATCTCTCCGCCCGCCGCGCCACCGCCTTGGAAGTCGGCCGCCGCTACGGCAGCCCG
GTTCTGCTGGAAATCGACGCGCGCGACATGCATCTGGCCGGGCACCTATTCCACCAGGCGGAGAACGGCGTC
TGGCTGACCGAGCGGGTACCCGTGCGGTTCATCCGCGAGGCTTGA
Translation:
MDRKTLDDTSKFLSYVLRHQPEAIGLKLDGEGWADIDALIAGAARDGRALDRALLGAVVENNDKKRFALSAD
GQRIRAVQGHSHAAVAIAYAPAVPPAVLYHGTASRFLDSIRERGLVPGSRHHVHLSARRATALEVGRRYGSP
VLLEIDARDMHLAGHLFHQAENGVWLTERVPVRFIREA*
AnnotationID:4111GeneID:4104
AnnotatorUID: danlee
Modification Date/Time: 2006-03-29 17:05:32
Gene Name:
Confidence Code:3
GeneProduct:putative RNA 2'-phosphotransferase
Cell Localization:()
Synonyms:PA0054
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1859,pfam01885
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58218.1| (AE016873) RNA 2'-phosphotransferase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 187

 Score =  206 bits (525), Expect = 4e-53
 Identities = 101/179 (56%), Positives = 126/179 (70%)

>emb|CAA22225.1| (AL939118) possible phosphotransferase [Streptomyces coelicolor
           A3(2)]
          Length = 182

 Score =  173 bits (439), Expect = 4e-43
 Identities = 95/180 (52%), Positives = 115/180 (63%), Gaps = 3/180 (1%)

>gb|AAL95298.1| (AE010615) tRNA 2'phosphotransferase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 179

 Score =  149 bits (376), Expect = 8e-36
 Identities = 79/171 (46%), Positives = 110/171 (64%), Gaps = 2/171 (1%)








 
Structural Features:
COG1859, KptA, RNA:NAD 2'-phosphotransferase 
[Translation, ribosomal structure and biogenesis]
CD-Length = 211 residues,  85.3% aligned
Score =  216 bits (552), Expect = 1e-57
Identities = 98/183 (53%), Positives = 120/183 (65%), Gaps = 4/183 (2%)

pfam01885, PTS_2-RNA, RNA 2'-phosphotransferase, Tpt1 / KptA family.
CD-Length = 179 residues,  99.4% aligned
Score =  180 bits (459), Expect = 6e-47
Identities = 91/178 (51%), Positives = 117/178 (65%), Gaps = 1/178 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8210




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25353




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33406




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4104_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4104
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6348
                           PA0054_tr
                           translation of PA0054
                           182
                           98.90
                           98.90
                           0
                           921.0
     

     
     
174548
                           gb|AAG03444.1|AE004445_5
                           (AE004445) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           182
                           98.90
                           98.90
                           0
                           921.0
     

     
     
174553
                           gb|AAO58218.1|
                           (AE016873) RNA 2'-phosphotransferase [Pseudomonas syringae pv. tomato str. DC3000]
                           187
                           54.01
                           67.91
                           5
                           525.0
     

     
     
174557
                           emb|CAD78993.1|
                           (BX294153) RNA 2-phosphotransferase [Pirellula sp.] [Pirellula sp. 1]
                           184
                           53.80
                           61.95
                           2
                           454.0
     

     
     
174558
                           emb|CAA22225.1|
                           (AL939118) possible phosphotransferase [Streptomyces coelicolor A3(2)]
                           185
                           51.35
                           62.16
                           6
                           439.0
     

     






      

          
GC ORFID: 47106How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0054Glimmer Score: 

          
Start: 5869072Stop: 5868524

          
Length: 549


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0054 translation of PA0054Homolog Bit Score 359.0

          
Other Homologs:  t_PA0054 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATCGGAAAACCCTCGACGACACCAGCAAGTTCCTCAGCTATGTCCTTCGCCACCAGCCCGAGGCCATC 
GGCCTGAAGCTGGACGGCGAAGGCTGGGCCGACATCGACGCCCTGATCGCCGGCGCGGCGCGGGACGGCCGC 
GCCCTCGACCGCGCGCTGCTCGGCGCGGTGGTCGAGAACAACGACAAGAAGCGCTTCGCCCTCTCCGCCGAT 
GGCCAGCGCATCCGCGCCGTGCAAGGCCACTCGCATGCCGCGGTGGCCATCGCCTACGCCCCCGCGGTCCCG 
CCCGCAGTGCTCTACCACGGCACCGCCAGCCGCTTCCTCGACTCCATCCGCGAGCGCGGCCTGGTCCCCGGC 
AGCCGCCACCACGTCCATCTCTCCGCCCGCCGCGCCACCGCCTTGGAAGTCGGCCGCCGCTACGGCAGCCCG 
GTTCTGCTGGAAATCGACGCGCGCGACATGCATCTGGCCGGGCACCTATTCCACCAGGCGGAGAACGGCGTC 
TGGCTGACCGAGCGGGTACCCGTGCGGTTCATCCGCGAGGCTTGA