ViewGene
Locus Name:
GeneID:
Location:

GeneID:4103
TrivialName: PA14_00780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00780
PAO1 Ortholog Locus:PA0066
Sequence Length:543
Protein Length:180
Start: 76276
Stop: 75734
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03456.1|AE004446_4 (AE004446) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 178/180 (98%), Positives = 179/180 (99%)
Sequence:
GTGACCATTCGTTCCTACCAGGGCAAAACGCCACTGCTCGGCGAGCGGGTCTTCGTCGATCCCTCGGCCGTG
CTCGTCGGCGACATCGAGATCGGCGCCGACAGCTCGGTCTGGCCGCTGGTGGTGATCCGCGGCGACATGCAC
CGCATCCGCATCGGCCAGCGCAGCAGCATCCAGGACGGCAGCGTGCTGCACATCACCCACGCCGGCCCCTTC
AACCCGGACGGTTTTCCGCTGAGCATCGGCGACGAAGTGACCGTCGGGCACAAGGTCCTGCTGCACGGTTGC
AGCATCGGCAACCGGGTGCTGGTGGGGATGGGCTCGATCGTCATGGACGGCGCGGTGATCGAGGACCAAGTG
ATCCTCGGCGCCGGCAGCCTGGTGCCGCCGGGCAAGGTGCTGGAGAGCGGCTTCCTCTACGTCGGCAGCCCG
GCGAAGAAGGCCCGTCCGCTGAGCGACAAGGAGCGCGGCTTCTTCACCTACACCGCCGGCAACTACGTGAAG
CTCAAGGACCTGCACATCGCCGAGGACTACCATGCGTGA
Translation:
MTIRSYQGKTPLLGERVFVDPSAVLVGDIEIGADSSVWPLVVIRGDMHRIRIGQRSSIQDGSVLHITHAGPF
NPDGFPLSIGDEVTVGHKVLLHGCSIGNRVLVGMGSIVMDGAVIEDQVILGAGSLVPPGKVLESGFLYVGSP
AKKARPLSDKERGFFTYTAGNYVKLKDLHIAEDYHA*
AnnotationID:4110GeneID:4103
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 17:05:29
Gene Name:
Confidence Code:3
GeneProduct:putative carbonic anhydrases
Cell Localization:()
Synonyms:PA0066
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative acetyltransferase
Functional Category Confidence Code:5
COGs:COG0663
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65729.1|AE016199_1 (AE016774) anhydrase, family 3 protein [Pseudomonas putida KT2440]
          Length = 182

 Score =  290 bits (743), Expect = 2e-78
 Identities = 134/178 (75%), Positives = 159/178 (89%)

>gb|AAF93236.1| (AE004096) carbonic anhydrase, family 3 [Vibrio cholerae]
          Length = 184

 Score =  246 bits (627), Expect = 6e-65
 Identities = 116/170 (68%), Positives = 146/170 (85%)

>gb|AAN53129.1|AE015455_10 (AE015455) carbonic anhydrase, family 3 [Shewanella oneidensis
           MR-1]
          Length = 182

 Score =  238 bits (607), Expect = 1e-62
 Identities = 108/174 (62%), Positives = 144/174 (82%)






 
Structural Features:
COG0663, PaaY, Carbonic anhydrases/acetyltransferases, 
isoleucine patch superfamily
CD-Length = 176 residues,  95.5% aligned
Score =  209 bits (533), Expect = 2e-55
Identities = 90/175 (51%), Positives = 121/175 (69%), Gaps = 7/175 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15018




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25351




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33418




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4103_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4103
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6346
                           PA0066_tr
                           translation of PA0066
                           180
                           98.88
                           99.44
                           0
                           922.0
     

     
     
174483
                           gb|AAG03456.1|AE004446_4
                           (AE004446) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           180
                           98.33
                           99.44
                           0
                           919.0
     

     
     
174484
                           gb|AAN65729.1|AE016199_1
                           (AE016774) anhydrase, family 3 protein [Pseudomonas putida KT2440]
                           182
                           73.07
                           87.36
                           2
                           737.0
     

     
     
174485
                           gb|AAO53699.1|
                           (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           181
                           72.37
                           86.74
                           1
                           731.0
     

     
     
174488
                           dbj|BAC61294.1|
                           (AP005083) carbonic anhydrase, family 3 [Vibrio parahaemolyticus]
                           183
                           62.84
                           79.23
                           4
                           603.0
     

     






      

          
GC ORFID: 47105How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0066Glimmer Score: 

          
Start: 5877613Stop: 5877071

          
Length: 543


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0066 translation of PA0066Homolog Bit Score 359.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4080 (ORF: BLASTX 293.0), t_PA3753 (ORF: BLASTX 128.0), t_PA0066 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACCATTCGTTCCTACCAGGGCAAAACGCCACTGCTCGGCGAGCGGGTCTTCGTCGATCCCTCGGCCGTG 
CTCGTCGGCGACATCGAGATCGGCGCCGACAGCTCGGTCTGGCCGCTGGTGGTGATCCGCGGCGACATGCAC 
CGCATCCGCATCGGCCAGCGCAGCAGCATCCAGGACGGCAGCGTGCTGCACATCACCCACGCCGGCCCCTTC 
AACCCGGACGGTTTTCCGCTGAGCATCGGCGACGAAGTGACCGTCGGGCACAAGGTCCTGCTGCACGGTTGC 
AGCATCGGCAACCGGGTGCTGGTGGGGATGGGCTCGATCGTCATGGACGGCGCGGTGATCGAGGACCAAGTG 
ATCCTCGGCGCCGGCAGCCTGGTGCCGCCGGGCAAGGTGCTGGAGAGCGGCTTCCTCTACGTCGGCAGCCCG 
GCGAAGAAGGCCCGTCCGCTGAGCGACAAGGAGCGCGGCTTCTTCACCTACACCGCCGGCAACTACGTGAAG 
CTCAAGGACCTGCACATCGCCGAGGACTACCATGCGTGA