ViewGene
Locus Name:
GeneID:
Location:

GeneID:4101
TrivialName: PA14_68380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68380
PAO1 Ortholog Locus:PA5176
Sequence Length:567
Protein Length:188
Start: 6101683
Stop: 6101117
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08561.1|AE004930_7 (AE004930) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 186/188 (98%), Positives = 186/188 (98%)
Sequence:
ATGCGTCAGAAACCCACCGTACTCGCCAGCGAGATCGTCGCGAAGAGCCGACTGTTCGCTGTCGAGGAGTTG
CAACTGCGCTTCAGCAATGGCGTCGAGCGCACCTACGAGCGTCTGGTCGGCAAGGGCCAGGGCTACGGTGCG
GTGATGGTGGTGGCCATGCTCGATGCCGAGCACGCGGTGCTGGTGGAGGAATATTGCGCCGGGGTCGACGAA
TACCAGTTGTCGCTGCCCAAGGGCCTGGTCGAGCCGGGCGAGGACATCCTCGCGGCGGCCAACCGCGAACTC
AAGGAAGAAGCGGGCTACGGGGCCCGGCAACTGGAGCACATCACCGAACTGTCGCTGTCGCCGGGCTACATG
AGCCAGCGCATCCAGGTGGTGCTGGCGCGCGATCTCTACGAGGAGCGCCTGCCGGGCGACGAGCCGGAGCCG
ATGGGCGTCGATCGCATCAGCCTGCGCGAACTCTCGAGCCTGGCCCAGCACGCCCAGTTCAGCGAAGGCCGC
GCCTTGGCCGCGCTGTACCTGGTGCGCGACCTGCTCACCCAGCGCGGCGAGTACCAGGCATGA
Translation:
MRQKPTVLASEIVAKSRLFAVEELQLRFSNGVERTYERLVGKGQGYGAVMVVAMLDAEHAVLVEEYCAGVDE
YQLSLPKGLVEPGEDILAAANRELKEEAGYGARQLEHITELSLSPGYMSQRIQVVLARDLYEERLPGDEPEP
MGVDRISLRELSSLAQHAQFSEGRALAALYLVRDLLTQRGEYQA*
AnnotationID:4108GeneID:4101
AnnotatorUID: diggins
Modification Date/Time: 2004-11-18 19:07:24
Gene Name:
Confidence Code:3
GeneProduct:putative DP compound hydrolase
Cell Localization:()
Synonyms:nudE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65891.1|AE016217_3 (AE016775) ADP compound hydrolase [Pseudomonas putida KT2440]
          Length = 188

 Score =  309 bits (791), Expect = 6e-84
 Identities = 153/184 (83%), Positives = 169/184 (91%)

>gb|AAO58824.1| (AE016875) mutT/nudix family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 188

 Score =  299 bits (766), Expect = 5e-81
 Identities = 152/187 (81%), Positives = 167/187 (89%)

>gb|AAN53277.1|AE015469_1 (AE015469) MutT/nudix family protein [Shewanella oneidensis MR-1]
          Length = 183

 Score =  180 bits (457), Expect = 3e-45
 Identities = 93/174 (53%), Positives = 124/174 (71%), Gaps = 3/174 (1%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8204




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25347




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34890




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4101_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4101
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6344
                           PA5176_tr
                           translation of PA5176
                           188
                           98.93
                           98.93
                           0
                           922.0
     

     
     
174441
                           gb|AAG08561.1|AE004930_7
                           (AE004930) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           188
                           98.93
                           98.93
                           0
                           922.0
     

     
     
174442
                           gb|AAN65891.1|AE016217_3
                           (AE016775) ADP compound hydrolase [Pseudomonas putida KT2440]
                           188
                           81.38
                           90.42
                           0
                           788.0
     

     
     
174443
                           gb|AAO58824.1|
                           (AE016875) mutT/nudix family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           188
                           80.85
                           88.82
                           0
                           765.0
     

     
     
174444
                           gb|AAN53277.1|AE015469_1
                           (AE015469) MutT/nudix family protein [Shewanella oneidensis MR-1]
                           191
                           49.21
                           65.96
                           11
                           459.0
     

     






      

          
GC ORFID: 47103How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5176Glimmer Score: 

          
Start: 5365369Stop: 5364803

          
Length: 567


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5176 translation of PA5176Homolog Bit Score 359.0

          
Other Homologs:  psyr_15may02_Scaffold14_revised_gene2433 (ORF: BLASTX 305.0), t_PA5176 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTCAGAAACCCACCGTACTCGCCAGCGAGATCGTCGCGAAGAGCCGACTGTTCGCTGTCGAGGAGTTG 
CAACTGCGCTTCAGCAATGGCGTCGAGCGCACCTACGAGCGTCTGGTCGGCAAGGGCCAGGGCTACGGTGCG 
GTGATGGTGGTGGCCATGCTCGATGCCGAGCACGCGGTGCTGGTGGAGGAATATTGCGCCGGGGTCGACGAA 
TACCAGTTGTCGCTGCCCAAGGGCCTGGTCGAGCCGGGCGAGGACATCCTCGCGGCGGCCAACCGCGAACTC 
AAGGAAGAAGCGGGCTACGGGGCCCGGCAACTGGAGCACATCACCGAACTGTCGCTGTCGCCGGGCTACATG 
AGCCAGCGCATCCAGGTGGTGCTGGCGCGCGATCTCTACGAGGAGCGCCTGCCGGGCGACGAGCCGGAGCCG 
ATGGGCGTCGATCGCATCAGCCTGCGCGAACTCTCGAGCCTGGCCCAGCACGCCCAGTTCAGCGAAGGCCGC 
GCCTTGGCCGCGCTGTACCTGGTGCGCGACCTGCTCACCCAGCGCGGCGAGTACCAGGCATGA