ViewGene
Locus Name:
GeneID:
Location:

GeneID:4100
TrivialName: PA14_23900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23900
PAO1 Ortholog Locus:PA3109
Sequence Length:543
Protein Length:180
Start: 2077612
Stop: 2078154
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06497.1|AE004735_4 (AE004735) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 180/180 (100%), Positives = 180/180 (100%)
Sequence:
GTGGCATTTACCTGGGTCGATTGGACGATGGTCGCCATCATCGTCGTTTCCAGCCTGATCAGTCTGAGTCGC
GGCTTCGTCAAGGAAGCCTTGTCCCTGCTTACCTGGATAGTCGCCGGCGCGGTGGCCTGGATGTTCGGCGGG
GCGCTGGCGCAGCACCTGGGCGAATACATCCAGACCCCCTCGGCCCGCATCATCGCAGCCTGCGCGCTGCTG
TTCATCGCGACCCTGCTGCTCGGGGCGCTGGTCAACTACCTCATCGGCGAACTGATCCGGGTCACCGGCCTG
TCCGGCACCGACCGCTTCCTCGGCATGGTCTTCGGCGGCGCGCGCGGCGTACTGCTGGTCGTGCTGCTGGTC
GGCCTGCTCAGCCTGGCTCCGGTACAGCAGGACCCTTGGTGGCAGCAGTCGGTGCTGATGCCGCATTTCCTG
ATGGTCGCCGACTGGTCGAAGAACTTCATTCTCGGTTTCGCCGGCCAGTGGTTGCCGGCCGCGCCGATAACG
CCGCCGAGCGGCATCGGCGGGCTGCTTCCCAGCCAGTGA
Translation:
MAFTWVDWTMVAIIVVSSLISLSRGFVKEALSLLTWIVAGAVAWMFGGALAQHLGEYIQTPSARIIAACALL
FIATLLLGALVNYLIGELIRVTGLSGTDRFLGMVFGGARGVLLVVLLVGLLSLAPVQQDPWWQQSVLMPHFL
MVADWSKNFILGFAGQWLPAAPITPPSGIGGLLPSQ*
AnnotationID:4107GeneID:4100
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 06:06:40
Gene Name:cvpA
Confidence Code:3
GeneProduct:putative colicin V production protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02674,COG1286
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67613.1|AE016391_4 (AE016781) bacteriocin production protein [Pseudomonas putida
           KT2440]
          Length = 185

 Score =  261 bits (666), Expect = 2e-69
 Identities = 124/173 (71%), Positives = 147/173 (84%)

>gb|AAO57281.1| (AE016869) cvpA family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 195

 Score =  248 bits (634), Expect = 1e-65
 Identities = 121/173 (69%), Positives = 146/173 (84%), Gaps = 1/173 (0%)







 
Structural Features:
pfam02674, Colicin_V, Colicin V production protein.
CD-Length = 153 residues, 100.0% aligned
Score =  109 bits (275), Expect = 2e-25
Identities = 64/153 (41%), Positives = 95/153 (62%), Gaps = 1/153 (0%)

COG1286, CvpA, Uncharacterized membrane protein, 
required for colicin V production
CD-Length = 182 residues,  98.4% aligned
Score =  125 bits (315), Expect = 4e-30
Identities = 66/179 (36%), Positives = 96/179 (53%), Gaps = 1/179 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15016




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25345




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32415




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4100_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4100
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6343
                           PA3109_tr
                           translation of PA3109
                           180
                           99.99
                           99.99
                           0
                           921.0
     

     
     
174413
                           gb|AAG06497.1|AE004735_4
                           (AE004735) hypothetical protein PA3109 [Pseudomonas aeruginosa PAO1]
                           180
                           99.44
                           99.99
                           0
                           918.0
     

     
     
174414
                           dbj|BAB13798.1|
                           (AB031231) colicin V production protein [Pseudomonas aeruginosa]
                           180
                           95.00
                           95.00
                           9
                           865.0
     

     
     
174415
                           gb|AAN67613.1|AE016391_4
                           (AE016781) bacteriocin production protein [Pseudomonas putida KT2440]
                           189
                           66.13
                           78.83
                           13
                           658.0
     

     
     
174416
                           gb|AAO57281.1|
                           (AE016869) cvpA family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           200
                           62.00
                           73.50
                           25
                           628.0
     

     






      

          
GC ORFID: 47102How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3109Glimmer Score: 

          
Start: 2876319Stop: 2875777

          
Length: 543


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3109 translation of PA3109Homolog Bit Score 359.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7133 (ORF: BLASTX 249.0), t_PA3109 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGCATTTACCTGGGTCGATTGGACGATGGTCGCCATCATCGTCGTTTCCAGCCTGATCAGTCTGAGTCGC 
GGCTTCGTCAAGGAAGCCTTGTCCCTGCTTACCTGGATAGTCGCCGGCGCGGTGGCCTGGATGTTCGGCGGG 
GCGCTGGCGCAGCACCTGGGCGAATACATCCAGACCCCCTCGGCCCGCATCATCGCAGCCTGCGCGCTGCTG 
TTCATCGCGACCCTGCTGCTCGGGGCGCTGGTCAACTACCTCATCGGCGAACTGATCCGGGTCACCGGCCTG 
TCCGGCACCGACCGCTTCCTCGGCATGGTCTTCGGCGGCGCGCGCGGCGTACTGCTGGTCGTGCTGCTGGTC 
GGCCTGCTCAGCCTGGCTCCGGTACAGCAGGACCCTTGGTGGCAGCAGTCGGTGCTGATGCCGCATTTCCTG 
ATGGTCGCCGACTGGTCGAAGAACTTCATTCTCGGTTTCGCCGGCCAGTGGTTGCCGGCCGCGCCGATAACG 
CCGCCGAGCGGCATCGGCGGGCTGCTTCCCAGCCAGTGA