ViewGene
Locus Name:
GeneID:
Location:

GeneID:410
TrivialName: PA14_41130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41130
PAO1 Ortholog Locus:PA1810
Sequence Length:1848
Protein Length:615
Start: 3667060
Stop: 3668907
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05199.1|AE004607_5 (AE004607) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 614/615 (99%), Positives = 614/615 (99%)
Sequence:
ATGATCCGTCCCCGCTTCACCCCTCTGCTGGCAGCCCTGCTGCTCGGCTGCTGCGGCCCGCTCCTCGCCGCC
CCGAAACATGCACTGACGCTCTACGATGAGCCTCCGAAGTATCCCGCCGATTTCAAGCATTTCGACTACGTG
AATCCGGATGCGCCGAAAGGCGGCATCCTCCGCCAGGCCGACTTCGGCGGCTTCGACAGCCTTAACCCGTTC
ATCGGCAAGGGCGTCTCGGCCCCTTCGCTGGGCCTGATCTACGACACCCTGGCCTTCCAGTCGCAGGACGAG
CCGTTCACCGAATACGGCCTGCTCGCGGAGAAGATCGAGAAGGCACCGGACAACAGCTACGTGCGCTTCTAC
CTGCGCCCCCAGGCCCGTTTCAGCGATGGCACGCCGGTCACCGCCGAAGACGTGGTGTTCACCTTCGAGACG
CTGGTGAGCAAGGGCGACCCGATGTACCGCAACTACTATGCGGACGTCGACAAGGTGGTCGCCGAGGACAAG
CTTCGCGTGCGCTTCGACTTCAAGCACGCCGGCAACCGCGAACTGCCGCTGATCCTCGGCCAGATCGCGATC
CTGCCGAAACACTGGTGGGCCGACCGCGACTTTTCCAAGACCGGCATGGAAATCCCGGTAGGCAGCGGTCCC
TACCGCATCGCCAAGGTCGATCCGGGACGCTCCATCAGCTACGAGCGAGTCAAGGACTGGTGGGCCAAGGAC
CTTCCGGTCTCCCGCGGACTCTATAACTTCGACACCATCACCATCGACTCCTATCGCGACATGTCGGTCGCC
CTGGAAGCCTTCAAGGCCGGCCAGTACGACGTCAACCTCGAATATTCGGCGAAGGACTGGGCCACCGGCTAC
GAGTCGCCGGCATTGCGCGACGGGCGCTTCATCAAGGCCAGCATCCACAACCACAACCCGGTGGGGATGCAG
GGCTTCGCCTTCAATATCCGCCGCCCGGTGTTCCAGGACCGCCGGGTACGCCAGGCGATCAGCCTGCTGTTC
GACTTCGAATGGTCGAACAAGCAGCTGTTCTTCAGCTCCTACAAGCGCACCAACAGCTATTTCGAGAACTCG
GAGATGGCCGCCCACCAGTTGCCCAGCGAAGCCGAGCTGAAGATCCTCGAACCGCTGCGCGGCAAGATTCCC
GACGAGGCCTTCGACCAGGTCTTCCAGAATCCGGTCAACGACGGCAGTGGGGTGATCCGCGAGCAGCGACGC
AAGGCCTACCAGTTGCTCACCGAGGCCGGCTACAGGATCGAGAACAACCGCATGGTAGGTCCCGACGGCCAG
CCACTGAGCTTCGAGTTCATGCTGTTCCAGGCCAACATGGAACGGGTCATCCTGCCGTTCAAGCGCAACCTG
GCCGAACTTGGCATCGATATGCAGATCCGTCGCGTCGACGTCTCGCAGTTCGTCAACCGCCTGCGCTCGCGG
GATTTCGACATGACCTCGGCGACCTGGCCGCAATCCAACTCGCCAGGCAACGAACAGCGAGAGTTCTGGCAT
TCCAGCAGCGCCGACAAGGCCGGCAGCCGCAACTTCATCGGCCTCAAGGACCCGGCCATCGACAGCCTGGTG
GAAAGCCTGATCCAGTCCGACTCGCGGCAAAGCCTGATCGACCATACCCGCGCCCTCGACCGCGTACTGTCG
TGGGGCTACTACGTGGTTCCCAACTACTACGTCGATACCTGGCGGGTCGCCTACTGGAACCGTTTCGGCCGG
CCGAAGGTGACGCCACTCTACGACTGGGGCCTGATGACCTGGTGGCAGACCAGCGACAAGGCGCTGCCGAGC
AAGGCGCAAGCCGAAGCCGCGCAAGACGCCGAGCCGGAACGGGAGTAA
Translation:
MIRPRFTPLLAALLLGCCGPLLAAPKHALTLYDEPPKYPADFKHFDYVNPDAPKGGILRQADFGGFDSLNPF
IGKGVSAPSLGLIYDTLAFQSQDEPFTEYGLLAEKIEKAPDNSYVRFYLRPQARFSDGTPVTAEDVVFTFET
LVSKGDPMYRNYYADVDKVVAEDKLRVRFDFKHAGNRELPLILGQIAILPKHWWADRDFSKTGMEIPVGSGP
YRIAKVDPGRSISYERVKDWWAKDLPVSRGLYNFDTITIDSYRDMSVALEAFKAGQYDVNLEYSAKDWATGY
ESPALRDGRFIKASIHNHNPVGMQGFAFNIRRPVFQDRRVRQAISLLFDFEWSNKQLFFSSYKRTNSYFENS
EMAAHQLPSEAELKILEPLRGKIPDEAFDQVFQNPVNDGSGVIREQRRKAYQLLTEAGYRIENNRMVGPDGQ
PLSFEFMLFQANMERVILPFKRNLAELGIDMQIRRVDVSQFVNRLRSRDFDMTSATWPQSNSPGNEQREFWH
SSSADKAGSRNFIGLKDPAIDSLVESLIQSDSRQSLIDHTRALDRVLSWGYYVVPNYYVDTWRVAYWNRFGR
PKVTPLYDWGLMTWWQTSDKALPSKAQAEAAQDAEPERE*
AnnotationID:419GeneID:410
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 18:06:35
Gene Name:
Confidence Code:3
GeneProduct:putative binding protein component of ABC transporter
Cell Localization:()
Synonyms:PA1810
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4166,COG0747
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69729.1|AE016609_3 (AE016789) peptide ABC transporter, periplamic peptide-binding
           protein [Pseudomonas putida KT2440]
          Length = 611

 Score =  860 bits (2222), Expect = 0.0
 Identities = 407/603 (67%), Positives = 490/603 (81%), Gaps = 2/603 (0%)

>gb|AAO57186.1| (AE016869) ABC transporter, periplasmic substrate-binding protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 618

 Score =  812 bits (2098), Expect = 0.0
 Identities = 384/600 (64%), Positives = 470/600 (78%), Gaps = 1/600 (0%)

>gb|AAP77070.1| (AE017145) periplasmic binding component of ABC-type transport
           system [Helicobacter hepaticus ATCC 51449]
          Length = 591

 Score =  513 bits (1321), Expect = e-144
 Identities = 262/583 (44%), Positives = 364/583 (62%), Gaps = 11/583 (1%)






 
Structural Features:
COG4166, OppA, ABC-type oligopeptide transport system, periplasmic component 
[Amino acid transport and metabolism]
CD-Length = 562 residues,  99.5% aligned
Score =  384 bits (987), Expect = 2e-107
Identities = 192/608 (31%), Positives = 274/608 (45%), Gaps = 60/608 (9%)

COG0747, DdpA, ABC-type dipeptide transport system, periplasmic component 
[Amino acid transport and metabolism]
CD-Length = 556 residues,  98.9% aligned
Score =  163 bits (412), Expect = 7e-41
Identities = 129/612 (21%), Positives = 208/612 (33%), Gaps = 75/612 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:823




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17965




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37128




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:410_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:410
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
694
                           PA1810_tr
                           translation of PA1810
                           615
                           99.83
                           99.83
                           0
                           3262.0
     

     
     
31568
                           gb|AAG05199.1|AE004607_5
                           (AE004607) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           615
                           99.83
                           99.83
                           0
                           3262.0
     

     
     
31569
                           gb|AAN69729.1|AE016609_3
                           (AE016789) peptide ABC transporter, periplamic peptide-binding protein [Pseudomonas putida KT2440]
                           624
                           65.70
                           78.84
                           22
                           2221.0
     

     
     
31570
                           gb|AAO57186.1|
                           (AE016869) ABC transporter, periplasmic substrate-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           622
                           62.37
                           76.52
                           11
                           2098.0
     

     
     
695
                           PA2058_tr
                           translation of PA2058
                           625
                           55.52
                           71.84
                           33
                           1882.0
     

     






      

          
GC ORFID: 43412How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1810Glimmer Score: 

          
Start: 1286849Stop: 1285002

          
Length: 1848


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1810 translation of PA1810Homolog Bit Score 1261.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene635 (ORF: BLASTX 827.0), t_PA2058 (ORF: BLASTX 730.0), psyr_15may02_Scaffold5_revised_gene6043 (ORF: BLASTX 622.0), psyr_15may02_Scaffold2_revised_gene3080 (ORF: BLASTX 620.0), psyr_15may02_Scaffold1_revised_gene634 (ORF: BLASTX 526.0), t_PA1811 (ORF: BLASTX 519.0), t_PA1810 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCCGTCCCCGCTTCACCCCTCTGCTGGCAGCCCTGCTGCTCGGCTGCTGCGGCCCGCTCCTCGCCGCC 
CCGAAACATGCACTGACGCTCTACGATGAGCCTCCGAAGTATCCCGCCGATTTCAAGCATTTCGACTACGTG 
AATCCGGATGCGCCGAAAGGCGGCATCCTCCGCCAGGCCGACTTCGGCGGCTTCGACAGCCTTAACCCGTTC 
ATCGGCAAGGGCGTCTCGGCCCCTTCGCTGGGCCTGATCTACGACACCCTGGCCTTCCAGTCGCAGGACGAG 
CCGTTCACCGAATACGGCCTGCTCGCGGAGAAGATCGAGAAGGCACCGGACAACAGCTACGTGCGCTTCTAC 
CTGCGCCCCCAGGCCCGTTTCAGCGATGGCACGCCGGTCACCGCCGAAGACGTGGTGTTCACCTTCGAGACG 
CTGGTGAGCAAGGGCGACCCGATGTACCGCAACTACTATGCGGACGTCGACAAGGTGGTCGCCGAGGACAAG 
CTTCGCGTGCGCTTCGACTTCAAGCACGCCGGCAACCGCGAACTGCCGCTGATCCTCGGCCAGATCGCGATC 
CTGCCGAAACACTGGTGGGCCGACCGCGACTTTTCCAAGACCGGCATGGAAATCCCGGTAGGCAGCGGTCCC 
TACCGCATCGCCAAGGTCGATCCGGGACGCTCCATCAGCTACGAGCGAGTCAAGGACTGGTGGGCCAAGGAC 
CTTCCGGTCTCCCGCGGACTCTATAACTTCGACACCATCACCATCGACTCCTATCGCGACATGTCGGTCGCC 
CTGGAAGCCTTCAAGGCCGGCCAGTACGACGTCAACCTCGAATATTCGGCGAAGGACTGGGCCACCGGCTAC 
GAGTCGCCGGCATTGCGCGACGGGCGCTTCATCAAGGCCAGCATCCACAACCACAACCCGGTGGGGATGCAG 
GGCTTCGCCTTCAATATCCGCCGCCCGGTGTTCCAGGACCGCCGGGTACGCCAGGCGATCAGCCTGCTGTTC 
GACTTCGAATGGTCGAACAAGCAGCTGTTCTTCAGCTCCTACAAGCGCACCAACAGCTATTTCGAGAACTCG 
GAGATGGCCGCCCACCAGTTGCCCAGCGAAGCCGAGCTGAAGATCCTCGAACCGCTGCGCGGCAAGATTCCC 
GACGAGGCCTTCGACCAGGTCTTCCAGAATCCGGTCAACGACGGCAGTGGGGTGATCCGCGAGCAGCGACGC 
AAGGCCTACCAGTTGCTCACCGAGGCCGGCTACAGGATCGAGAACAACCGCATGGTAGGTCCCGACGGCCAG 
CCACTGAGCTTCGAGTTCATGCTGTTCCAGGCCAACATGGAACGGGTCATCCTGCCGTTCAAGCGCAACCTG 
GCCGAACTTGGCATCGATATGCAGATCCGTCGCGTCGACGTCTCGCAGTTCGTCAACCGCCTGCGCTCGCGG 
GATTTCGACATGACCTCGGCGACCTGGCCGCAATCCAACTCGCCAGGCAACGAACAGCGAGAGTTCTGGCAT 
TCCAGCAGCGCCGACAAGGCCGGCAGCCGCAACTTCATCGGCCTCAAGGACCCGGCCATCGACAGCCTGGTG 
GAAAGCCTGATCCAGTCCGACTCGCGGCAAAGCCTGATCGACCATACCCGCGCCCTCGACCGCGTACTGTCG 
TGGGGCTACTACGTGGTTCCCAACTACTACGTCGATACCTGGCGGGTCGCCTACTGGAACCGTTTCGGCCGG 
CCGAAGGTGACGCCACTCTACGACTGGGGCCTGATGACCTGGTGGCAGACCAGCGACAAGGCGCTGCCGAGC 
AAGGCGCAAGCCGAAGCCGCGCAAGACGCCGAGCCGGAACGGGAGTAA