ViewGene
Locus Name:
GeneID:
Location:

GeneID:41
TrivialName: PA14_21700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21700
PAO1 Ortholog Locus:PA3271
Sequence Length:3480
Protein Length:1159
Start: 1887201
Stop: 1883722
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06659.1|AE004749_8 (AE004749) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 1158/1159 (99%), Positives = 1158/1159 (99%)
Sequence:
ATGTCGCTGTCCATCGGGCTGATCGCCGTGGTCGCCCTGGTCTACATGGCCATCCTGTTCGCCATCGCCTTC
TATGGCGACCGTCGCCGCACCCCGCTCTCACCCCGCCTGCGCGCCTGGGTCTACAGCCTCTCCCTGGCAGTG
TACTGCACCAGCTGGACCTTCTTCGGCGCGGTCGGCCAGGCCACCGACCAGCTCTGGTCGTTCCTGCCGATC
TACCTCGGACCGGTGCTGCTGATGCTGTTCGCGCCCTGGGTGCTGCAGAAGATGATCATGATCAGCAAGCAG
GAGAACATCACCTCCATCGCCGACTTCATCGCCGCCCGCTACGGCAAGTCGCAGGCGCTGGCGGTGGTGGTG
GCGCTGATCTGCATGGTCGGCGTGCTGCCCTACATCGCCCTGCAACTGAAAGGCATCGTCCTCGGGGTGAAC
CTGCTGATCGGCTCCGGCGCCGACTCCACCGGTACCCGCGCCCAGGACACGGCGCTGATCGTGTCGCTGGTG
CTGGCGCTGTTCACCATCGTCTTCGGTACCCGCAGCCTGGATGTCACCGAACACCACCGCGGCATGGTCCTG
GCCATCGCCTTCGAGTCGCTGGTCAAGCTCACCGCCTTCCTCGCCGTGGGCATCTTCGTCACCTTCGGCCTC
TACGACGGCTTCGCCGATCTCTTCTCCCAGGCCCGCGCCGCGCCGCAGTTGGCCGACTACTGGGAAGAGACC
GTGCACTGGCCGGCGATGCTGCTGCAGACCGGCGTGGCGATGACCGCGATCATGTGCCTGCCGCGGCAATTC
CACGTCACCGTGGTGGAGAACATCGAGCCGCGCGACCTCAACCTGGCGCGCTGGGTGTTCCCCATCTACCTG
GTGCTGGCCGCGTTGTTCGTGGTGCCGATCGCCCTCGCCGGCCAGTTGCACCTGCCCGCCGGGGTAATGCCG
GACTCCTTCGTCATCAGCCTGCCGCTGGCCGAGGCACACCCGGCGCTGGCCCTGCTGGCATTCATCGGCGGC
GCCTCGGCCGCCACCGGAATGGTCATCGTCGCCAGCGTCGCGCTGTCGACCATGGTCTCCAACGACATGCTC
CTGCCGTGGCTGCTGCGACGCCGGGAAAAGGACACCGAACGGCCCTTCGAGGCCTTCCGTCACTGGCTGCTG
ACCGTGCGCCGGGTGAGCATCGCGGTGATCCTGCTGCTCGCCTACGTGGCCTACCGCCTGCTCGGCTCCAGC
GCCAGCCTGGCGACCATCGGCCAGATCGCCTTCGCCGCCATCGCCCAGCTCGGCCCGGCGATGATCGGCGCG
CTGTACTGGAAACAGGCCAACCGCCGCGGGGTCTTCGCCGGCCTCGCCGCCGGCTCGCTGCTGTGGGCCTAT
ACGCTGGTCCTGCCGGTGGTGGCCAAGGGCCTTGGCTGGCCGCTGGAGCGCATCCCCGGCCTGACCTGGCTG
GCAAGCAATCCCTTCGGCCTGCCGATCGAGCCGCTGACCCAGGGCGTGCTGATCTCGCTGGTCGGCAACTTC
GCCCTGTTCGGCCTGGTCTCGGTGCTCTCGCGCACCCGCGTGTCCGAGCACTGGCAGGCCAGCCGCTTCATC
GGCCAGGAGATCTCCCAGCGGCAGAACTCGCGCTTCATGCTCGCGGTGCAGGTGGAAGACCTGCTGATGCTC
GCCGCGCGTTTCGTCGGAGAGGAACGCGCGCGGCAAAGCTTCATCCGCTTCGCCTACCGCCAGGGCAAGGGC
TTCACCCCGAACCAGACCGCCAACAACGAGTGGATCGCGCACACCGAGCGCCTGCTCGCCGGGGTCCTCGGC
GCGTCCTCGGCGCGGGCGGTGGTGAAGGCCGCCATCGAAGGGCGCGAGATGCAGGTGGAGGACGTGGTGCGG
ATCGCCGACGAAGCCTCCGAGGTGCTGCAATTCAACCGCGCCCTGCTGCAGGGCGCGATCGAGAACATCACC
CAGGGCATCAGCGTGGTCGACCAGTCGCTGCGCCTGGTGGCCTGGAACCACCGCTACCTGGAACTGTTCGAG
TACCCGGACGGACTGATCTACGTCGGCCGACCGATCGCCGACATCATCCGCTACAACGCCGATCGCGGCCTG
TGCGGGCCCGGCGATCCGGACATGCACGTGGCCAAGCGCCTGTACTGGATGCGCCAGGGCACTCCGCACACC
TCCGAGCGGCTGTTCCCCAACGGCCGGGTCATCGAGCTGATCGGCAACCCGATGCCCGGCGGCGGCTTCGTC
ATGAGCTTCACCGATATCACCGCCTACCGCGAGGCCGAACAGGGCCTCAAGGGCGCCAACGAGTCGCTGGAA
CAGCGGGTCCAGGAGCGTACCCAGGAACTCTCGCAGTTGAACCAGGAACTCAGCGAGGCGAAGAGCAACGCC
GAGGCCGCCAACCAGTCGAAGACCCGCTTCCTCGCCGCCGTCAGCCACGACCTGATGCAGCCGCTGAACGCC
GCGCGGCTGTTCTCCGCCGCCCTCGCCCACCAGGACGCGCTGCCCGGTGAGGTCCGCGACCTGGTGCAGCAC
CTCGACTCGTCGCTGCGTTCCGCCGAGGACCTGATCACCGACCTGCTGGACATCTCGCGCCTGGAAAGCGGC
CGGGTCAGCGCCGAACGCAACCCGTTCCCGCTGAACAACCTCTACGATGCCCTCGGCGTCGAGTTCAAGGCG
CTGGCCCAGGAACAGGGCCTGCATTTCCGCCTGCGCGGCAGCCAGCTGCGGGTGGACAGCGACATCAAGCTG
CTGCGGCGCATCCTACAGAACTTCCTGACCAACGCTTTCCGCTACGCCAAGGGCCACGTGCTGCTCGGCGTG
CGCCGCGAGGACGGCTACCTGCGCCTGGAAGTCTGGGATCAGGGGCCGGGCATCCCCCCGGACAAGCAGAAA
GTCATCTTCGAAGAGTTCAAGCGCCTGGACAGCCACCAGACCCGCGCGGAGAAAGGCCTCGGTCTCGGCCTG
GCGATCGCCGACCGGCTCTGCAAGGTCCTCGGCCATCCGCTGGAGGTACGTTCCTGGCCGGGCAAGGGCAGC
GTCTTCAGCGTCCGCGTACCGCTGGCGCGGCAGGCGCCGCCGGCCCTGGCCAACGGCCACAAGGCCGAACCG
GCGCAAGCGCTGAACGGCGCCCAGGTGCTCTGCGTGGACAACGAAGACAGCATCCTCGCCGGCATGAACAGC
CTGCTCAGCCGCTGGGGCTGCCAGGTCTGGACCGCGCGCAGCCGCGAGGAATGCGCCACGCTGCTGGACAGC
GAGATGCGCCCGCAACTGGCGTTGATCGACTATCACCTGGACGACGGCGAGACCGGTACGCAATTGATGGCC
TGGCTGCGCACGCGCCTGGGCGAGCCGGTGCCGGGCGTGGTGATCAGCGCCGACGCGCGGCCGGAACTGGTG
GCGGAGATCCACGCTGCCGGCCTCGACTACCTGTCCAAGCCGGTCAAGCCGGCCGCGTTGCGGGCCCTGCTC
AGCCGCCATCTGAGCCTGCGCTGA
Translation:
MSLSIGLIAVVALVYMAILFAIAFYGDRRRTPLSPRLRAWVYSLSLAVYCTSWTFFGAVGQATDQLWSFLPI
YLGPVLLMLFAPWVLQKMIMISKQENITSIADFIAARYGKSQALAVVVALICMVGVLPYIALQLKGIVLGVN
LLIGSGADSTGTRAQDTALIVSLVLALFTIVFGTRSLDVTEHHRGMVLAIAFESLVKLTAFLAVGIFVTFGL
YDGFADLFSQARAAPQLADYWEETVHWPAMLLQTGVAMTAIMCLPRQFHVTVVENIEPRDLNLARWVFPIYL
VLAALFVVPIALAGQLHLPAGVMPDSFVISLPLAEAHPALALLAFIGGASAATGMVIVASVALSTMVSNDML
LPWLLRRREKDTERPFEAFRHWLLTVRRVSIAVILLLAYVAYRLLGSSASLATIGQIAFAAIAQLGPAMIGA
LYWKQANRRGVFAGLAAGSLLWAYTLVLPVVAKGLGWPLERIPGLTWLASNPFGLPIEPLTQGVLISLVGNF
ALFGLVSVLSRTRVSEHWQASRFIGQEISQRQNSRFMLAVQVEDLLMLAARFVGEERARQSFIRFAYRQGKG
FTPNQTANNEWIAHTERLLAGVLGASSARAVVKAAIEGREMQVEDVVRIADEASEVLQFNRALLQGAIENIT
QGISVVDQSLRLVAWNHRYLELFEYPDGLIYVGRPIADIIRYNADRGLCGPGDPDMHVAKRLYWMRQGTPHT
SERLFPNGRVIELIGNPMPGGGFVMSFTDITAYREAEQGLKGANESLEQRVQERTQELSQLNQELSEAKSNA
EAANQSKTRFLAAVSHDLMQPLNAARLFSAALAHQDALPGEVRDLVQHLDSSLRSAEDLITDLLDISRLESG
RVSAERNPFPLNNLYDALGVEFKALAQEQGLHFRLRGSQLRVDSDIKLLRRILQNFLTNAFRYAKGHVLLGV
RREDGYLRLEVWDQGPGIPPDKQKVIFEEFKRLDSHQTRAEKGLGLGLAIADRLCKVLGHPLEVRSWPGKGS
VFSVRVPLARQAPPALANGHKAEPAQALNGAQVLCVDNEDSILAGMNSLLSRWGCQVWTARSREECATLLDS
EMRPQLALIDYHLDDGETGTQLMAWLRTRLGEPVPGVVISADARPELVAEIHAAGLDYLSKPVKPAALRALL
SRHLSLR*
AnnotationID:51GeneID:41
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 18:06:00
Gene Name:
Confidence Code:3
GeneProduct:putative sensory box histidine kinase/response regulator
Cell Localization:()
Synonyms:PA3271
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative sodium-solute symporter/sensory box histidine kinase/response regulator
Functional Category Confidence Code:5
COGs:COG0591
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57366.1| (AE016870) sensory box histidine kinase/response regulator
            [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 1157

 Score = 1832 bits (4745), Expect = 0.0
 Identities = 921/1160 (79%), Positives = 1034/1160 (89%), Gaps = 6/1160 (0%)

>gb|AAN67316.1|AE016357_9 (AE016780) sodium-solute symporter/sensory box histidine
            kinase/response regulator, putative [Pseudomonas putida
            KT2440]
          Length = 1159

 Score = 1815 bits (4700), Expect = 0.0
 Identities = 917/1159 (79%), Positives = 1016/1159 (87%), Gaps = 3/1159 (0%)

>dbj|BAC61137.1| (AP005083) sensor histidine kinase [Vibrio parahaemolyticus]
          Length = 1143

 Score = 1070 bits (2766), Expect = 0.0
 Identities = 577/1159 (49%), Positives = 794/1159 (68%), Gaps = 33/1159 (2%)








 
Structural Features:
COG0591, PutP, Na+/proline symporter [Amino acid transport and metabolism]
CD-Length = 493 residues, 100.0% aligned
Score =  274 bits (701), Expect = 5e-74
Identities = 136/530 (25%), Positives = 218/530 (41%), Gaps = 43/530 (8%)








   
Genomic Context:






   
Comment:


















    ReferenceID:85




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17227




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:41
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
80
                           PA3271_tr
                           translation of PA3271
                           1159
                           99.91
                           99.91
                           0
                           5867.0
     

     
     
11503
                           gb|AAG06659.1|AE004749_8
                           (AE004749) probable two-component sensor [Pseudomonas aeruginosa PAO1]
                           1159
                           99.91
                           99.91
                           0
                           5867.0
     

     
     
11504
                           gb|AAO57366.1|
                           (AE016870) sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000]
                           1161
                           79.32
                           89.06
                           6
                           4752.0
     

     
     
11505
                           gb|AAN67316.1|AE016357_9
                           (AE016780) sodium-solute symporter/sensory box histidine kinase/response regulator, putative [Pseudomonas putida KT2440]
                           1161
                           78.98
                           87.51
                           4
                           4703.0
     

     
     
11510
                           gb|AAK71637.1|AF388670_1
                           (AF388670) proline sensor PrlS [Aeromonas hydrophila]
                           1205
                           51.12
                           67.05
                           95
                           2800.0
     

     






      

          
GC ORFID: 43043How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3271Glimmer Score: 

          
Start: 3066730Stop: 3070209

          
Length: 3480


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3271 translation of PA3271Homolog Bit Score 2264.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1526 (ORF: BLASTX 1818.0), t_PA1992 (ORF: BLASTX 323.0), t_PA3271 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGCTGTCCATCGGGCTGATCGCCGTGGTCGCCCTGGTCTACATGGCCATCCTGTTCGCCATCGCCTTC 
TATGGCGACCGTCGCCGCACCCCGCTCTCACCCCGCCTGCGCGCCTGGGTCTACAGCCTCTCCCTGGCAGTG 
TACTGCACCAGCTGGACCTTCTTCGGCGCGGTCGGCCAGGCCACCGACCAGCTCTGGTCGTTCCTGCCGATC 
TACCTCGGACCGGTGCTGCTGATGCTGTTCGCGCCCTGGGTGCTGCAGAAGATGATCATGATCAGCAAGCAG 
GAGAACATCACCTCCATCGCCGACTTCATCGCCGCCCGCTACGGCAAGTCGCAGGCGCTGGCGGTGGTGGTG 
GCGCTGATCTGCATGGTCGGCGTGCTGCCCTACATCGCCCTGCAACTGAAAGGCATCGTCCTCGGGGTGAAC 
CTGCTGATCGGCTCCGGCGCCGACTCCACCGGTACCCGCGCCCAGGACACGGCGCTGATCGTGTCGCTGGTG 
CTGGCGCTGTTCACCATCGTCTTCGGTACCCGCAGCCTGGATGTCACCGAACACCACCGCGGCATGGTCCTG 
GCCATCGCCTTCGAGTCGCTGGTCAAGCTCACCGCCTTCCTCGCCGTGGGCATCTTCGTCACCTTCGGCCTC 
TACGACGGCTTCGCCGATCTCTTCTCCCAGGCCCGCGCCGCGCCGCAGTTGGCCGACTACTGGGAAGAGACC 
GTGCACTGGCCGGCGATGCTGCTGCAGACCGGCGTGGCGATGACCGCGATCATGTGCCTGCCGCGGCAATTC 
CACGTCACCGTGGTGGAGAACATCGAGCCGCGCGACCTCAACCTGGCGCGCTGGGTGTTCCCCATCTACCTG 
GTGCTGGCCGCGTTGTTCGTGGTGCCGATCGCCCTCGCCGGCCAGTTGCACCTGCCCGCCGGGGTAATGCCG 
GACTCCTTCGTCATCAGCCTGCCGCTGGCCGAGGCACACCCGGCGCTGGCCCTGCTGGCATTCATCGGCGGC 
GCCTCGGCCGCCACCGGAATGGTCATCGTCGCCAGCGTCGCGCTGTCGACCATGGTCTCCAACGACATGCTC 
CTGCCGTGGCTGCTGCGACGCCGGGAAAAGGACACCGAACGGCCCTTCGAGGCCTTCCGTCACTGGCTGCTG 
ACCGTGCGCCGGGTGAGCATCGCGGTGATCCTGCTGCTCGCCTACGTGGCCTACCGCCTGCTCGGCTCCAGC 
GCCAGCCTGGCGACCATCGGCCAGATCGCCTTCGCCGCCATCGCCCAGCTCGGCCCGGCGATGATCGGCGCG 
CTGTACTGGAAACAGGCCAACCGCCGCGGGGTCTTCGCCGGCCTCGCCGCCGGCTCGCTGCTGTGGGCCTAT 
ACGCTGGTCCTGCCGGTGGTGGCCAAGGGCCTTGGCTGGCCGCTGGAGCGCATCCCCGGCCTGACCTGGCTG 
GCAAGCAATCCCTTCGGCCTGCCGATCGAGCCGCTGACCCAGGGCGTGCTGATCTCGCTGGTCGGCAACTTC 
GCCCTGTTCGGCCTGGTCTCGGTGCTCTCGCGCACCCGCGTGTCCGAGCACTGGCAGGCCAGCCGCTTCATC 
GGCCAGGAGATCTCCCAGCGGCAGAACTCGCGCTTCATGCTCGCGGTGCAGGTGGAAGACCTGCTGATGCTC 
GCCGCGCGTTTCGTCGGAGAGGAACGCGCGCGGCAAAGCTTCATCCGCTTCGCCTACCGCCAGGGCAAGGGC 
TTCACCCCGAACCAGACCGCCAACAACGAGTGGATCGCGCACACCGAGCGCCTGCTCGCCGGGGTCCTCGGC 
GCGTCCTCGGCGCGGGCGGTGGTGAAGGCCGCCATCGAAGGGCGCGAGATGCAGGTGGAGGACGTGGTGCGG 
ATCGCCGACGAAGCCTCCGAGGTGCTGCAATTCAACCGCGCCCTGCTGCAGGGCGCGATCGAGAACATCACC 
CAGGGCATCAGCGTGGTCGACCAGTCGCTGCGCCTGGTGGCCTGGAACCACCGCTACCTGGAACTGTTCGAG 
TACCCGGACGGACTGATCTACGTCGGCCGACCGATCGCCGACATCATCCGCTACAACGCCGATCGCGGCCTG 
TGCGGGCCCGGCGATCCGGACATGCACGTGGCCAAGCGCCTGTACTGGATGCGCCAGGGCACTCCGCACACC 
TCCGAGCGGCTGTTCCCCAACGGCCGGGTCATCGAGCTGATCGGCAACCCGATGCCCGGCGGCGGCTTCGTC 
ATGAGCTTCACCGATATCACCGCCTACCGCGAGGCCGAACAGGGCCTCAAGGGCGCCAACGAGTCGCTGGAA 
CAGCGGGTCCAGGAGCGTACCCAGGAACTCTCGCAGTTGAACCAGGAACTCAGCGAGGCGAAGAGCAACGCC 
GAGGCCGCCAACCAGTCGAAGACCCGCTTCCTCGCCGCCGTCAGCCACGACCTGATGCAGCCGCTGAACGCC 
GCGCGGCTGTTCTCCGCCGCCCTCGCCCACCAGGACGCGCTGCCCGGTGAGGTCCGCGACCTGGTGCAGCAC 
CTCGACTCGTCGCTGCGTTCCGCCGAGGACCTGATCACCGACCTGCTGGACATCTCGCGCCTGGAAAGCGGC 
CGGGTCAGCGCCGAACGCAACCCGTTCCCGCTGAACAACCTCTACGATGCCCTCGGCGTCGAGTTCAAGGCG 
CTGGCCCAGGAACAGGGCCTGCATTTCCGCCTGCGCGGCAGCCAGCTGCGGGTGGACAGCGACATCAAGCTG 
CTGCGGCGCATCCTACAGAACTTCCTGACCAACGCTTTCCGCTACGCCAAGGGCCACGTGCTGCTCGGCGTG 
CGCCGCGAGGACGGCTACCTGCGCCTGGAAGTCTGGGATCAGGGGCCGGGCATCCCCCCGGACAAGCAGAAA 
GTCATCTTCGAAGAGTTCAAGCGCCTGGACAGCCACCAGACCCGCGCGGAGAAAGGCCTCGGTCTCGGCCTG 
GCGATCGCCGACCGGCTCTGCAAGGTCCTCGGCCATCCGCTGGAGGTACGTTCCTGGCCGGGCAAGGGCAGC 
GTCTTCAGCGTCCGCGTACCGCTGGCGCGGCAGGCGCCGCCGGCCCTGGCCAACGGCCACAAGGCCGAACCG 
GCGCAAGCGCTGAACGGCGCCCAGGTGCTCTGCGTGGACAACGAAGACAGCATCCTCGCCGGCATGAACAGC 
CTGCTCAGCCGCTGGGGCTGCCAGGTCTGGACCGCGCGCAGCCGCGAGGAATGCGCCACGCTGCTGGACAGC 
GAGATGCGCCCGCAACTGGCGTTGATCGACTATCACCTGGACGACGGCGAGACCGGTACGCAATTGATGGCC 
TGGCTGCGCACGCGCCTGGGCGAGCCGGTGCCGGGCGTGGTGATCAGCGCCGACGCGCGGCCGGAACTGGTG 
GCGGAGATCCACGCTGCCGGCCTCGACTACCTGTCCAAGCCGGTCAAGCCGGCCGCGTTGCGGGCCCTGCTC 
AGCCGCCATCTGAGCCTGCGCTGA