ViewGene

Locus Name:
GeneID:
Location:

GeneID:4099
TrivialName: PA14_41690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41690
PAO1 Ortholog Locus:PA1768
Sequence Length:540
Protein Length:179
Start: 3721917
Stop: 3722456
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05157.1|AE004602_8 (AE004602) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 179/179 (100%), Positives = 179/179 (100%)
Sequence:
ATGAAACTCAAGCCCTTAGCTCCCCTGCTCTGCCTATTCATCGCCGTACCAGGCCTGAGCGTAGCCGCCGAA
AAGACGGTCTACGGCCTGAACGAATACGCGCGCATCAACGACCCGGACATCCAGCTGGCCGCCAAGCTCGAC
ACCGGCGCCAAGACCGCCTCCCTCAGCGCCCGCGACATCAAGCGTTTCAAGCGCGACGGCGAAACCTGGGTG
CGCTTCTACCTGGCCACCGACAACGCCGACGACACCCCGATCGAGAAGCCCCTGGCGCGGATCAGCAAGATC
AAGCGCCGCCACGGCGACTTCAACCCCGACGAGGGCAAGGCCTATACCGCCCGTCCGGTGATCGAGCTGCAG
GTCTGCATGGGCAAGGCGATTCGCACCATCGAAGTGAACCTGACCGACCGAAGTGCATTCCAATACCCGCTT
TTGATCGGCTCGGAGGCCTTGAAGAAATTCGACGCACTGGTCGATCCGAGTTTGAAATACTCGGCCGGGAAA
CCCGGCTGCAAACCTGATGCAAAACCTGCTGAGTAA
Translation:
MKLKPLAPLLCLFIAVPGLSVAAEKTVYGLNEYARINDPDIQLAAKLDTGAKTASLSARDIKRFKRDGETWV
RFYLATDNADDTPIEKPLARISKIKRRHGDFNPDEGKAYTARPVIELQVCMGKAIRTIEVNLTDRSAFQYPL
LIGSEALKKFDALVDPSLKYSAGKPGCKPDAKPAE*
AnnotationID:4106GeneID:4099
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 08:08:09
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1768
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:8200
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25343
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37081
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4099_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4099

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6341 PA1768_tr translation of PA1768 179 99.99 99.99 0 921.0
174407 gb|AAG05157.1|AE004602_8 (AE004602) hypothetical protein PA1768 [Pseudomonas aeruginosa PAO1] 179 99.99 99.99 0 921.0
174408 gb|AAN67945.1|AE016426_10 (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440] 179 73.18 84.35 1 665.0
174409 gb|AAO55799.1| (AE016864) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 185 68.10 81.08 8 638.0
174412 gb|AAN65964.1|AE016224_8 (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440] 183 48.63 65.57 21 399.0
GC ORFID: 47101How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1768Glimmer Score:
Start: 1231992Stop: 1231453
Length: 540
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA1768 translation of PA1768Homolog Bit Score 359.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene374 (ORF: BLASTX 252.0), t_PA1768 (ORF: GLIMMER)
GC ORF Sequence
ATGAAACTCAAGCCCTTAGCTCCCCTGCTCTGCCTATTCATCGCCGTACCAGGCCTGAGCGTAGCCGCCGAA
AAGACGGTCTACGGCCTGAACGAATACGCGCGCATCAACGACCCGGACATCCAGCTGGCCGCCAAGCTCGAC
ACCGGCGCCAAGACCGCCTCCCTCAGCGCCCGCGACATCAAGCGTTTCAAGCGCGACGGCGAAACCTGGGTG
CGCTTCTACCTGGCCACCGACAACGCCGACGACACCCCGATCGAGAAGCCCCTGGCGCGGATCAGCAAGATC
AAGCGCCGCCACGGCGACTTCAACCCCGACGAGGGCAAGGCCTATACCGCCCGTCCGGTGATCGAGCTGCAG
GTCTGCATGGGCAAGGCGATTCGCACCATCGAAGTGAACCTGACCGACCGAAGTGCATTCCAATACCCGCTT
TTGATCGGCTCGGAGGCCTTGAAGAAATTCGACGCACTGGTCGATCCGAGTTTGAAATACTCGGCCGGGAAA
CCCGGCTGCAAACCTGATGCAAAACCTGCTGAGTAA