ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4098

TrivialName: PA14_59400

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_59400

PAO1 Ortholog Locus:

Sequence Length: 540

Protein Length: 179

Start: 5290227

Stop: 5290766

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAP84199.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa] Identities = 179/179 (100%), Positives = 179/179 (100%)

Sequence:

CTGACGGGCAAGGTGTTTCTCCGCTTTCGCTTACGAAACTGGAGAATCATCATGAGCAACAACACCCAAGCC
CAAGAAGCCAAGTATTTCGACCTGCACACCACCGGTATCGGCTACCTCAATCGCATCCGCGAGGTACCGATC
CGCCGAGGTGAACCATTCCTCGCCGTAACCGTCGCAGCCCTCCATGGCGCGGCAGACAGCGTGGAATACTCC
TACATCGACTGCAAAGTGGTCGGCGCCCAGGCTGAAAAGCTTGTCCGCCGTTGCAAGGAAGCAGTCGAGGCC
AAGAAGAAGGTTCTGATTTCCTTCCGTATCGGCGATATCTGGGCGGATCCCTTCATCCACCAGAAAGGCGAG
AAACAAGGCAAGCCCGACGCAAGCCTCAAAGGCCGGCTGCTCTTCATCTCCTGGATCAAAGTGGATGGCACC
ACCGTCTACGATGCGAAGGAAGAAGCTGAAAAAGCCCAGCAAGGCAAAGGCGAACCTCAAGGTGAGCCCGCA
GCCCCCGCTGAGCACGCTGAACAAGCCGCTGCTTGA

Translation:

MTGKVFLRFRLRNWRIIMSNNTQAQEAKYFDLHTTGIGYLNRIREVPIRRGEPFLAVTVAALHGAADSVEYS
YIDCKVVGAQAEKLVRRCKEAVEAKKKVLISFRIGDIWADPFIHQKGEKQGKPDASLKGRLLFISWIKVDGT
TVYDAKEEAEKAQQGKGEPQGEPAAPAEHAEQAAA*

AnnotationID:4105 GeneID:4098

AnnotatorUID: diggins

Modification Date/Time: 2006-01-29 09:09:27

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold

Genomic Context:

Comment:

ReferenceID:15014

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:25341

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:4098

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

174400 gb|AAP84199.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa] 179 99.44 99.99 0 923.0

174401 gb|AAP95832.1| (AE017153) hypothetical protein HD0951 [Haemophilus ducreyi 35000HP] 187 37.96 52.40 38 333.0

174402 emb|CAE92936.1| (AJ617740) hypothetical protein [Pseudomonas putida] 324 25.00 32.71 164 331.0

174403 gb|AAN62175.1|AF440523_82 (AF440523) conserved hypothetical protein [Pseudomonas aeruginosa] 332 23.79 32.83 153 328.0

174406 gb|AAN62308.1|AF440524_95 (AF440524) conserved hypothetical protein [Pseudomonas aeruginosa] 295 23.72 33.55 117 286.0

GC ORFID: `47100`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_RL074`	Glimmer Score:
Start: `4553906`	Stop: `4554445`
Length: `540`
Start Codon: `CTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_RL074 179 Homolog: XF1761 / Hypothetical protein / X.fastidiosa / 9a5c (AAF84570) translation of RL074`	Homolog Bit Score `360.0`
Other Homologs: `t_RL074 (ORF: GLIMMER)`
GC ORF Sequence
CTGACGGGCAAGGTGTTTCTCCGCTTTCGCTTACGAAACTGGAGAATCATCATGAGCAACAACACCCAAGCC CAAGAAGCCAAGTATTTCGACCTGCACACCACCGGTATCGGCTACCTCAATCGCATCCGCGAGGTACCGATC CGCCGAGGTGAACCATTCCTCGCCGTAACCGTCGCAGCCCTCCATGGCGCGGCAGACAGCGTGGAATACTCC TACATCGACTGCAAAGTGGTCGGCGCCCAGGCTGAAAAGCTTGTCCGCCGTTGCAAGGAAGCAGTCGAGGCC AAGAAGAAGGTTCTGATTTCCTTCCGTATCGGCGATATCTGGGCGGATCCCTTCATCCACCAGAAAGGCGAG AAACAAGGCAAGCCCGACGCAAGCCTCAAAGGCCGGCTGCTCTTCATCTCCTGGATCAAAGTGGATGGCACC ACCGTCTACGATGCGAAGGAAGAAGCTGAAAAAGCCCAGCAAGGCAAAGGCGAACCTCAAGGTGAGCCCGCA GCCCCCGCTGAGCACGCTGAACAAGCCGCTGCTTGA