ViewGene
Locus Name:
GeneID:
Location:

GeneID:4096
TrivialName: PA14_61510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61510
PAO1 Ortholog Locus:PA4649
Sequence Length:534
Protein Length:177
Start: 5487610
Stop: 5488143
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08036.1|AE004879_2 (AE004879) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 176/177 (99%), Positives = 177/177 (100%)
Sequence:
ATGGTCCTGGGGGGACCGATGAGCCTGAACCGCTACTTCACCGGAGGACTGCTCTGCCTGCTCGGCTGCAAC
CCGGCAAACGCGCAGACCGCCACCATCGTCCTGAGCGCCACGCTGCTCCCGGCCTGCGAGGCAGGTAGCGTC
GGCAGCGGCGGCGCGATCACCTTCGGCACCCTCGACTTCGGCCAGTACGCCTCCCTGAACAACGCCATCAGC
GCCACCAGCCAGCAAGGCGCAGGCTCCATCCGGGTCAAGTGCGTCAGCGGCCAGACCTATGCGATCACGCTC
GACGGCGGGCTCTACGGCAGCGTCGCCACGCGGCGCATGGCGAACATCGCCAACACCGCCCTCACCCTGACC
TACAACCTGTACAGCGACCGCCCCGGCGGCATCGTCTGGGACAACACCACCGGCGTTGCCGCCACCGGCAAC
GGCAACGACCAGTGGTACCCCATCTACGGCCTGGTGCCGGCACAGACCACGCCGGTCGCCGGGACCTACCGC
GACACCGTCAACGTGACCATCAGCTGGTGA
Translation:
MVLGGPMSLNRYFTGGLLCLLGCNPANAQTATIVLSATLLPACEAGSVGSGGAITFGTLDFGQYASLNNAIS
ATSQQGAGSIRVKCVSGQTYAITLDGGLYGSVATRRMANIANTALTLTYNLYSDRPGGIVWDNTTGVAATGN
GNDQWYPIYGLVPAQTTPVAGTYRDTVNVTISW*
AnnotationID:4103GeneID:4096
AnnotatorUID: diggins
Modification Date/Time: 2005-05-08 18:06:13
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4649
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC90519.1| (AJ414150) putative exported protein [Yersinia pestis CO92]
          Length = 176

 Score =  125 bits (315), Expect = 9e-29
 Identities = 67/162 (41%), Positives = 95/162 (58%), Gaps = 4/162 (2%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8194




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25337




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37585




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4096_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4096
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6339
                           PA4649_tr
                           translation of PA4649
                           177
                           99.43
                           99.99
                           0
                           923.0
     

     
     
174395
                           gb|AAG08036.1|AE004879_2
                           (AE004879) hypothetical protein PA4649 [Pseudomonas aeruginosa PAO1]
                           177
                           99.43
                           99.99
                           0
                           923.0
     

     
     
174396
                           gb|AAM85428.1|AE013789_5
                           (AE013789) hypothetical [Yersinia pestis KIM]
                           182
                           39.01
                           56.59
                           7
                           318.0
     

     
     
174397
                           emb|CAC90519.1|
                           (AJ414150) putative exported protein [Yersinia pestis CO92]
                           187
                           37.43
                           55.08
                           21
                           317.0
     

     






      

          
GC ORFID: 47098How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4649Glimmer Score: 

          
Start: 4751290Stop: 4751823

          
Length: 534


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4649 translation of PA4649Homolog Bit Score 360.0

          
Other Homologs:  t_PA4649 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTCCTGGGGGGACCGATGAGCCTGAACCGCTACTTCACCGGAGGACTGCTCTGCCTGCTCGGCTGCAAC 
CCGGCAAACGCGCAGACCGCCACCATCGTCCTGAGCGCCACGCTGCTCCCGGCCTGCGAGGCAGGTAGCGTC 
GGCAGCGGCGGCGCGATCACCTTCGGCACCCTCGACTTCGGCCAGTACGCCTCCCTGAACAACGCCATCAGC 
GCCACCAGCCAGCAAGGCGCAGGCTCCATCCGGGTCAAGTGCGTCAGCGGCCAGACCTATGCGATCACGCTC 
GACGGCGGGCTCTACGGCAGCGTCGCCACGCGGCGCATGGCGAACATCGCCAACACCGCCCTCACCCTGACC 
TACAACCTGTACAGCGACCGCCCCGGCGGCATCGTCTGGGACAACACCACCGGCGTTGCCGCCACCGGCAAC 
GGCAACGACCAGTGGTACCCCATCTACGGCCTGGTGCCGGCACAGACCACGCCGGTCGCCGGGACCTACCGC 
GACACCGTCAACGTGACCATCAGCTGGTGA