ViewGene
Locus Name:
GeneID:
Location:

GeneID:4095
TrivialName: PA14_11690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11690
PAO1 Ortholog Locus:PA4031
Sequence Length:528
Protein Length:175
Start: 1013699
Stop: 1013172
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07418.1|AE004820_3 (AE004820) inorganic pyrophosphatase [Pseudomonas aeruginosa PAO1]
Identities = 175/175 (100%), Positives = 175/175 (100%)
Sequence:
ATGAGCTACAGCAAGATCCCGGCCGGCAAGGACCTGCCGAACGACATCTACGTCGCTATCGAGATTCCGGCC
AACCATGCGCCGATCAAGTACGAGATCGACAAGGACACCGACTGCCTGTTCGTCGACCGTTTCATGGCCACC
CCGATGTTCTACCCGGCCAACTACGGCTTCATCCCGAACACCCTGGCCGACGACGGCGACCCGCTGGACGTG
CTGGTGGTGACCCCCTATCCGGTCGCTCCCGGTTCGGTGATCCGCGCGCGCCCGGTTGGCGTCCTGCACATG
ACCGACGAGGCAGGCGGCGACGCCAAGCTGATCGCCGTGCCGCACGACAAGCTGAGCGTCCTGTACAAGGAC
GTGAAGGAATACACCGACCTGCCGGCCCTGCTGCTGGAGCAGATCAAGCACTTCTTCGAGAACTACAAGGAT
CTCGAGAAAGGCAAGTGGGTCAAGGTCGAAGGCTGGGGCAACGCCGACGCCGCCCGCGCCGAGATCACCAAG
GCCGTGGCCGCGTTCCAGAAGTAA
Translation:
MSYSKIPAGKDLPNDIYVAIEIPANHAPIKYEIDKDTDCLFVDRFMATPMFYPANYGFIPNTLADDGDPLDV
LVVTPYPVAPGSVIRARPVGVLHMTDEAGGDAKLIAVPHDKLSVLYKDVKEYTDLPALLLEQIKHFFENYKD
LEKGKWVKVEGWGNADAARAEITKAVAAFQK*
AnnotationID:4102GeneID:4095
AnnotatorUID: urbach
Modification Date/Time: 2004-10-04 18:06:46
Gene Name:ppa
Confidence Code:2
GeneProduct:PPase
Cell Localization:()
Synonyms:ipyR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0221,pfam00719
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAA97123.1| (U14003) ppa [Escherichia coli]
Length = 176
Score =  251 bits (642), Expect = 1e-66
Identities = 124/175 (70%), Positives = 142/175 (81%), Gaps = 3/175 (1%)






 
Structural Features:
gnl|CDD|10096 COG0221, Ppa, Inorganic pyrophosphatase [Energy production and conversion]
Length = 171
Score =  215 bits (548), Expect = 6e-57
Identities = 104/175 (59%), Positives = 129/175 (73%), Gaps = 4/175 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8192




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25335




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34620




  
Author/Investigator(s):
        Kankare J, Neal GS, Salminen T, Glumoff T, Glumhoff T [corrected to Glumoff T, Cooperman BS, Lahti R, Goldman A.





  
Title:
        The structure of E.coli soluble inorganic pyrophosphatase at 2.7 A resolution.




  
PubMed:
        7971944


MedLine:
        




    
Source:
Protein Eng. 1994 Jul;7(7):823-30.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids=95062129&dopt=Citation

















    ReferenceID:34621




  
Author/Investigator(s):
        Lahti R, Pitkaranta T, Valve E, Ilta I, Kukko-Kalske E, Heinonen J.





  
Title:
        Cloning and characterization of the gene encoding inorganic pyrophosphatase of Escherichia coli K-12.




  
PubMed:
        2848015


MedLine:
        




    
Source:
J Bacteriol. 1988 Dec;170(12):5901-7.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2848015









           
Homologs By Global Alignment 

           

       



     
Gene ID:4095
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6338
                           PA4031_tr
                           translation of PA4031
                           175
                           99.99
                           99.99
                           0
                           925.0
     

     
     
174179
                           gb|AAG07418.1|AE004820_3
                           (AE004820) inorganic pyrophosphatase [Pseudomonas aeruginosa PAO1]
                           175
                           99.99
                           99.99
                           0
                           925.0
     

     
     
174180
                           gb|AAO54264.1|
                           (AE016858) inorganic pyrophosphatase [Pseudomonas syringae pv. tomato str. DC3000]
                           175
                           92.57
                           96.00
                           0
                           871.0
     

     
     
174181
                           gb|AAN66165.1|AE016244_6
                           (AE016776) inorganic pyrophosphatase [Pseudomonas putida KT2440]
                           175
                           88.57
                           94.85
                           0
                           828.0
     

     
     
174184
                           gb|AAN83744.1|AE016771_255
                           (AE016771) Inorganic pyrophosphatase [Escherichia coli CFT073]
                           179
                           69.83
                           79.32
                           7
                           645.0
     

     






      

          
GC ORFID: 47097How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4031Glimmer Score: 

          
Start: 3940238Stop: 3940765

          
Length: 528


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4031 translation of PA4031Homolog Bit Score 360.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3629 (ORF: BLASTX 340.0), psyr_15may02_Scaffold10_revised_gene1611 (ORF: BLASTX 267.0), t_PA4031 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCTACAGCAAGATCCCGGCCGGCAAGGACCTGCCGAACGACATCTACGTCGCTATCGAGATTCCGGCC 
AACCATGCGCCGATCAAGTACGAGATCGACAAGGACACCGACTGCCTGTTCGTCGACCGTTTCATGGCCACC 
CCGATGTTCTACCCGGCCAACTACGGCTTCATCCCGAACACCCTGGCCGACGACGGCGACCCGCTGGACGTG 
CTGGTGGTGACCCCCTATCCGGTCGCTCCCGGTTCGGTGATCCGCGCGCGCCCGGTTGGCGTCCTGCACATG 
ACCGACGAGGCAGGCGGCGACGCCAAGCTGATCGCCGTGCCGCACGACAAGCTGAGCGTCCTGTACAAGGAC 
GTGAAGGAATACACCGACCTGCCGGCCCTGCTGCTGGAGCAGATCAAGCACTTCTTCGAGAACTACAAGGAT 
CTCGAGAAAGGCAAGTGGGTCAAGGTCGAAGGCTGGGGCAACGCCGACGCCGCCCGCGCCGAGATCACCAAG 
GCCGTGGCCGCGTTCCAGAAGTAA