ViewGene
Locus Name:
GeneID:
Location:

GeneID:4094
TrivialName: PA14_39870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39870
PAO1 Ortholog Locus:PA1906
Sequence Length:537
Protein Length:178
Start: 3554748
Stop: 3555284
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05294.1|AE004616_8 (AE004616) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 171/178 (96%), Positives = 172/178 (96%)
Sequence:
ATGCATATCCCGCCCGAGCTGATCATCCACCAGACCCGCCACTGGACGCTGAACCAGCGGATCGACTCGGCC
CTGCCCGGCTACTGCATGCTCGGCTCGCGGCAACCGGCGACGGCCTTCCACCAACTGCCGGAACAAGCCCTC
GCCGAATTCGGGCCGCTGCTGGCCAGGGTCGAGCGCGAAATGGACGCGCTGCTGCGGCCGCGACGCATCTAT
GTCGGTCGCTACGGTCACATGCCCGGCCTGCCGGTGCATTTCCACCTGATTCCACTGTACGACTGGGTCGAG
GAACTGTTCTGGGAGGACACGCGCTACCGGACGCTCCAGCAGTTCGGCGTGCCGACCACCGAACCCCTTACC
GATGGCGCCGAGCTGACCCTGTTCGTCTGGCGCGAATTCTGCGAACGCGCCGATCCACCGGCCGTGCGCGGC
ATGGATCGGCAACAGGCGATCGCCGGATTGCGCCGGGCCTTCGGCCACGGCGTCCAACCCCGAACATCGCCT
GGGCCGGACTCCGAGCCCGCGCAGGGCGCATGA
Translation:
MHIPPELIIHQTRHWTLNQRIDSALPGYCMLGSRQPATAFHQLPEQALAEFGPLLARVEREMDALLRPRRIY
VGRYGHMPGLPVHFHLIPLYDWVEELFWEDTRYRTLQQFGVPTTEPLTDGAELTLFVWREFCERADPPAVRG
MDRQQAIAGLRRAFGHGVQPRTSPGPDSEPAQGA*
AnnotationID:4101GeneID:4094
AnnotatorUID: diggins
Modification Date/Time: 2005-06-05 15:03:26
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:apaH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0537
Secondary Functional Category(ies):putative enzyme
EC Number:3.6.1.41
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase 
and other HIT family hydrolases 
[Nucleotide transport and metabolism / Carbohydrate transport and metabolism]
CD-Length = 138 residues,  72.5% aligned
Score = 62.7 bits (152), Expect = 3e-11
Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 4/100 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8190




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25333




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37029




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4094_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4094
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6337
                           PA1906_tr
                           translation of PA1906
                           178
                           96.06
                           96.62
                           0
                           925.0
     

     
     
174178
                           gb|AAG05294.1|AE004616_8
                           (AE004616) hypothetical protein PA1906 [Pseudomonas aeruginosa PAO1]
                           178
                           96.06
                           96.62
                           0
                           925.0
     

     






      

          
GC ORFID: 47096How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1906Glimmer Score: 

          
Start: 1399163Stop: 1398627

          
Length: 537


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1906 translation of PA1906Homolog Bit Score 360.0

          
Other Homologs:  t_PA1906 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATATCCCGCCCGAGCTGATCATCCACCAGACCCGCCACTGGACGCTGAACCAGCGGATCGACTCGGCC 
CTGCCCGGCTACTGCATGCTCGGCTCGCGGCAACCGGCGACGGCCTTCCACCAACTGCCGGAACAAGCCCTC 
GCCGAATTCGGGCCGCTGCTGGCCAGGGTCGAGCGCGAAATGGACGCGCTGCTGCGGCCGCGACGCATCTAT 
GTCGGTCGCTACGGTCACATGCCCGGCCTGCCGGTGCATTTCCACCTGATTCCACTGTACGACTGGGTCGAG 
GAACTGTTCTGGGAGGACACGCGCTACCGGACGCTCCAGCAGTTCGGCGTGCCGACCACCGAACCCCTTACC 
GATGGCGCCGAGCTGACCCTGTTCGTCTGGCGCGAATTCTGCGAACGCGCCGATCCACCGGCCGTGCGCGGC 
ATGGATCGGCAACAGGCGATCGCCGGATTGCGCCGGGCCTTCGGCCACGGCGTCCAACCCCGAACATCGCCT 
GGGCCGGACTCCGAGCCCGCGCAGGGCGCATGA