ViewGene
Locus Name:
GeneID:
Location:

GeneID:4093
TrivialName: PA14_06970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06970
PAO1 Ortholog Locus:PA0535
Sequence Length:555
Protein Length:184
Start: 604554
Stop: 605108
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03924.1|AE004490_4 (AE004490) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 183/184 (99%), Positives = 183/184 (99%)
Sequence:
ATGAGCGAAGTAGCCGACGACCTGGCGGAGATCGCCAGCCTGGTGCGCGAATTGCGCAAGCGCAAGGGCATC
ACCCTGCAGGCGCTGGCCGACGGCATTCGCCGTTCGGTGGGCTTCGTCTCCCAGGTCGAGCGCGGCCTGTCG
CGGCCGGCGGTGGACGACCTGGTCGCCATCAGCCAGGTGCTCGGGGTGCCGGCGACCTACTTCTTCTGCTCG
CCGAAGACCCAGGCCTCGCCCTGGGTGACCCGTCCGGGCGAGCGTCGGACCCTGGCCTACGCTCGTGGCGCC
AGCGACAACCTGGTGTCGCCGCGTCTTGGCGGTGCCTTCTTCATGCTCGAAACCTGCCTTGAAGCGGGTGCC
GACAGCGGCGAGCGCGACCTGCTGGACAGCTCGGAGCAGGGCGGCTACGTGCTCGAAGGCGAGCTGACCCTG
TGGCTGGAGGACGAGGAGCTGCGCCTGCAGGCCGGCGACGGTTTCCAGATTCCCAGCCATATGCGCAGCCGC
TATGCCAACCGCAGCCAGGCGCCGGTCAGGGTGCTCTGGGTATACGCCTGA
Translation:
MSEVADDLAEIASLVRELRKRKGITLQALADGIRRSVGFVSQVERGLSRPAVDDLVAISQVLGVPATYFFCS
PKTQASPWVTRPGERRTLAYARGASDNLVSPRLGGAFFMLETCLEAGADSGERDLLDSSEQGGYVLEGELTL
WLEDEELRLQAGDGFQIPSHMRSRYANRSQAPVRVLWVYA*
AnnotationID:4100GeneID:4093
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 18:06:35
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, Cro/CI family
Cell Localization:()
Synonyms:PA0535
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00093,smart00530,pfam01381
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67794.1|AE016410_10 (AE016782) transcriptional regulator, Cro/CI family [Pseudomonas
           putida KT2440]
          Length = 184

 Score =  188 bits (477), Expect = 2e-47
 Identities = 102/183 (55%), Positives = 127/183 (69%), Gaps = 1/183 (0%)








 
Structural Features:
cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins.
CD-Length = 58 residues, 100.0% aligned
Score = 50.9 bits (122), Expect = 9e-08
Identities = 18/58 (31%), Positives = 33/58 (56%)

smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins 
CD-Length = 56 residues,  98.2% aligned
Score = 50.1 bits (120), Expect = 1e-07
Identities = 17/55 (30%), Positives = 34/55 (61%)

pfam01381, HTH_3, Helix-turn-helix.
CD-Length = 55 residues, 100.0% aligned
Score = 49.8 bits (119), Expect = 2e-07
Identities = 16/55 (29%), Positives = 33/55 (60%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8188




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25331




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33838




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4093_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4093
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6336
                           PA0535_tr
                           translation of PA0535
                           184
                           99.45
                           99.45
                           0
                           927.0
     

     
     
174175
                           gb|AAG03924.1|AE004490_4
                           (AE004490) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           184
                           99.45
                           99.45
                           0
                           927.0
     

     
     
174176
                           gb|AAN67794.1|AE016410_10
                           (AE016782) transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440]
                           185
                           55.13
                           68.64
                           2
                           478.0
     

     
     
174177
                           gb|AAN67790.1|AE016410_6
                           (AE016782) transcriptional regulator, putative [Pseudomonas putida KT2440]
                           185
                           51.35
                           66.48
                           2
                           446.0
     

     






      

          
GC ORFID: 47095How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0535Glimmer Score: 

          
Start: 6405896Stop: 6406450

          
Length: 555


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0535 translation of PA0535Homolog Bit Score 361.0

          
Other Homologs:  t_PA0535 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAAGTAGCCGACGACCTGGCGGAGATCGCCAGCCTGGTGCGCGAATTGCGCAAGCGCAAGGGCATC 
ACCCTGCAGGCGCTGGCCGACGGCATTCGCCGTTCGGTGGGCTTCGTCTCCCAGGTCGAGCGCGGCCTGTCG 
CGGCCGGCGGTGGACGACCTGGTCGCCATCAGCCAGGTGCTCGGGGTGCCGGCGACCTACTTCTTCTGCTCG 
CCGAAGACCCAGGCCTCGCCCTGGGTGACCCGTCCGGGCGAGCGTCGGACCCTGGCCTACGCTCGTGGCGCC 
AGCGACAACCTGGTGTCGCCGCGTCTTGGCGGTGCCTTCTTCATGCTCGAAACCTGCCTTGAAGCGGGTGCC 
GACAGCGGCGAGCGCGACCTGCTGGACAGCTCGGAGCAGGGCGGCTACGTGCTCGAAGGCGAGCTGACCCTG 
TGGCTGGAGGACGAGGAGCTGCGCCTGCAGGCCGGCGACGGTTTCCAGATTCCCAGCCATATGCGCAGCCGC 
TATGCCAACCGCAGCCAGGCGCCGGTCAGGGTGCTCTGGGTATACGCCTGA