ViewGene

Locus Name:
GeneID:
Location:

GeneID:4092
TrivialName: PA14_63880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63880
PAO1 Ortholog Locus:PA4831
Sequence Length:561
Protein Length:186
Start: 5693146
Stop: 5693706
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08216.1|AE004896_6 (AE004896) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 185/186 (99%), Positives = 186/186 (100%)
Sequence:
ATGCGTTATCCCGAAGACCACAAGCAGAAGACCCGCCGGCGTATCGTCGAGGAGGCTGCCCGGCTGTTCCGC
CAGGACGGCGTCGGCGCCACCGGGCTGCAACCGCTGATGAAAGCCCTGGGCCTGACCCACGGCGGCTTCTAC
GCGCACTTCAAGTCCAAGGACGACCTGGTGGAAACCGCGTTGCGGCATGCCGCGGCGCAACTCGACGAAGTC
ACCGCGCCCCTGGCGGAGGCGGAACGACCGCTGGCGCTGCTGATAGAGCAGTACCTGTCGCCGCGTCACCGC
GATAACCCCGGCGCCGGCTGCCCGTTGCCTACCCTGTCGGCGGAACTCGGCCAGCGCGGCACGCCGAGCCCG
ACCACCGACAGCATCGTGCGCAAGCGCCTGGCGATGATCGAAGCGGCCCTGGAGGGCGAGGACGCAGGCGAG
CGCGCCGTGCTGCTGCTCGCTTCGCTGGTCGGCGCGCTGCAACTGTCGCGCAGCGTGCAGGATGAGGCGCTG
TCGCAACGGATACTGGAAGCGACGCGCAAGAAGCTGCTGGAGCAGATGGAGCGCTAG
Translation:
MRYPEDHKQKTRRRIVEEAARLFRQDGVGATGLQPLMKALGLTHGGFYAHFKSKDDLVETALRHAAAQLDEV
TAPLAEAERPLALLIEQYLSPRHRDNPGAGCPLPTLSAELGQRGTPSPTTDSIVRKRLAMIEAALEGEDAGE
RAVLLLASLVGALQLSRSVQDEALSQRILEATRKKLLEQMER*
AnnotationID:4099GeneID:4092
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 07:07:59
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA4831
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1309,pfam00440
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAK50298.1|U66917_66 (U66917) putative transcriptional regulator [Pseudomonas sp. ADP]
          Length = 188

 Score =  241 bits (614), Expect = 2e-63
 Identities = 125/186 (67%), Positives = 147/186 (79%), Gaps = 1/186 (0%)

>gb|AAO55278.1| (AE016862) transcriptional regulator, TetR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 189

 Score =  191 bits (485), Expect = 2e-48
 Identities = 100/186 (53%), Positives = 128/186 (68%)
Structural Features:
COG1309, AcrR, Transcriptional regulator [Transcription]
CD-Length = 201 residues,  96.0% aligned
Score = 48.5 bits (113), Expect = 4e-07
Identities = 49/193 (25%), Positives = 74/193 (38%), Gaps = 7/193 (3%)

pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.
CD-Length = 47 residues,  95.7% aligned
Score = 46.1 bits (110), Expect = 3e-06
Identities = 16/45 (35%), Positives = 27/45 (60%)
Genomic Context:
Comment:
ReferenceID:8186
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25329
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35218
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4092_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4092

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6335 PA4831_tr translation of PA4831 186 99.46 99.99 0 926.0
174169 gb|AAG08216.1|AE004896_6 (AE004896) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 186 99.46 99.99 0 926.0
174170 gb|AAK50298.1|U66917_66 (U66917) putative transcriptional regulator [Pseudomonas sp. ADP] 188 66.48 78.19 2 614.0
174171 gb|AAO55278.1| (AE016862) transcriptional regulator, TetR family [Pseudomonas syringae pv. tomato str. DC3000] 189 52.91 67.72 3 485.0
174172 gb|AAQ58063.1| (AE016911) probable transcriptional regulator, TetR family [Chromobacterium violaceum ATCC 12472] 197 42.63 55.83 19 342.0
GC ORFID: 47094How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4831Glimmer Score:
Start: 4956826Stop: 4957386
Length: 561
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA4831 translation of PA4831Homolog Bit Score 361.0
Other Homologs: t_PA4831 (ORF: GLIMMER)
GC ORF Sequence
ATGCGTTATCCCGAAGACCACAAGCAGAAGACCCGCCGGCGTATCGTCGAGGAGGCTGCCCGGCTGTTCCGC
CAGGACGGCGTCGGCGCCACCGGGCTGCAACCGCTGATGAAAGCCCTGGGCCTGACCCACGGCGGCTTCTAC
GCGCACTTCAAGTCCAAGGACGACCTGGTGGAAACCGCGTTGCGGCATGCCGCGGCGCAACTCGACGAAGTC
ACCGCGCCCCTGGCGGAGGCGGAACGACCGCTGGCGCTGCTGATAGAGCAGTACCTGTCGCCGCGTCACCGC
GATAACCCCGGCGCCGGCTGCCCGTTGCCTACCCTGTCGGCGGAACTCGGCCAGCGCGGCACGCCGAGCCCG
ACCACCGACAGCATCGTGCGCAAGCGCCTGGCGATGATCGAAGCGGCCCTGGAGGGCGAGGACGCAGGCGAG
CGCGCCGTGCTGCTGCTCGCTTCGCTGGTCGGCGCGCTGCAACTGTCGCGCAGCGTGCAGGATGAGGCGCTG
TCGCAACGGATACTGGAAGCGACGCGCAAGAAGCTGCTGGAGCAGATGGAGCGCTAG