ViewGene
Locus Name:
GeneID:
Location:

GeneID:4091
TrivialName: PA14_15680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15680
PAO1 Ortholog Locus:PA3767
Sequence Length:549
Protein Length:182
Start: 1333891
Stop: 1334439
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07154.1|AE004795_6 (AE004795) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 182/182 (100%), Positives = 182/182 (100%)
Sequence:
GTGCGGGTGACTAAGCTGATCAGCAACGGCAAGGGCTACCCGACGGTAAAAGGTGTGCGTCCGATCATCGAT
CGCAGCCGGGACCCGCATTTCATGCGCGAGGCCCTGGCAGAGGCGGAAAAGGCCGCGGCCCTCGGCGAAGTG
CCGGTGGGCGCGGTCCTGGTGCGCGAGGGCGAGATCATCGGGCGGGGCTTCAACCGGCCGATCAGCAGCCAC
GATCCCAGTGCCCACGCCGAAATGCTGGCGATCCGCATGGCAGCGGCGGAGGCGGGCAACTACCGGCTGCCA
GGCAGCACCCTGTATGTGACCCTGGAACCCTGCAGCATGTGTTCCGGACTGCTGGTGCACGCACGCATCCAG
CGCCTGGTGTACGGCACGGTCGAGCCCAAGTCGGGCGCAGTGGAAAGCCGTGGGCGATTCTTCGAGCAGGAG
CATCTCAACCATAGGGTCATGGTCGAGGGCGGCGTGCTGGCGGAAGAATGCAGCCAGGCGCTCTCGGCGTTC
TTCCGCGCGCGGCGCGAAGCGGCGAAGAAGCCTCGCGAAGACTGA
Translation:
MRVTKLISNGKGYPTVKGVRPIIDRSRDPHFMREALAEAEKAAALGEVPVGAVLVREGEIIGRGFNRPISSH
DPSAHAEMLAIRMAAAEAGNYRLPGSTLYVTLEPCSMCSGLLVHARIQRLVYGTVEPKSGAVESRGRFFEQE
HLNHRVMVEGGVLAEECSQALSAFFRARREAAKKPRED*
AnnotationID:4098GeneID:4091
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 13:01:03
Gene Name:
Confidence Code:3
GeneProduct:putative Cytosine/adenosine deaminase
Cell Localization:()
Synonyms:cumB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:putative zinc-binding hydrolase
Functional Category Confidence Code:5
COGs:COG0590,pfam00383,KOG1018
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54978.1| (AE016861) cytidine/deoxycytidylate deaminase family protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 169

 Score =  223 bits (569), Expect = 3e-58
 Identities = 114/163 (69%), Positives = 129/163 (79%), Gaps = 2/163 (1%)

>gb|AAN66660.1|AE016294_2 (AE016777) cumB protein [Pseudomonas putida KT2440]
          Length = 145

 Score =  211 bits (536), Expect = 2e-54
 Identities = 103/145 (71%), Positives = 122/145 (84%)

>gb|AAO90166.1| (AE016961) zinc-binding domain protein [Coxiella burnetii RSA 493]
          Length = 142

 Score =  172 bits (436), Expect = 9e-43
 Identities = 83/142 (58%), Positives = 108/142 (76%)








 
Structural Features:
COG0590, CumB, Cytosine/adenosine deaminases 
[Nucleotide transport and metabolism / Translation, 
ribosomal structure and biogenesis]
CD-Length = 152 residues,  96.7% aligned
Score =  185 bits (471), Expect = 5e-48
Identities = 87/147 (59%), Positives = 103/147 (70%), Gaps = 1/147 (0%)

pfam00383, dCMP_cyt_deam, Cytidine and deoxycytidylate deaminase 
zinc-binding region.
CD-Length = 103 residues,  95.1% aligned
Score =  110 bits (275), Expect = 3e-25
Identities = 48/98 (48%), Positives = 64/98 (65%), Gaps = 2/98 (2%)

KOG1018, KOG1018, KOG1018, Cytosine deaminase FCY1 and related enzymes 
[Nucleotide transport and metabolism]
CD-Length = 169 residues,  98.2% aligned
Score =  100 bits (251), Expect = 2e-22
Identities = 55/166 (33%), Positives = 77/166 (46%), Gaps = 8/166 (4%)







   
Genomic Context:






   
Comment:


















    ReferenceID:15010




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25327




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31790




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4091_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4091
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6334
                           PA3767_tr
                           translation of PA3767
                           182
                           99.99
                           99.99
                           0
                           926.0
     

     
     
174053
                           gb|AAG07154.1|AE004795_6
                           (AE004795) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           182
                           99.45
                           99.99
                           0
                           923.0
     

     
     
174054
                           gb|AAO54978.1|
                           (AE016861) cytidine/deoxycytidylate deaminase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           187
                           61.49
                           70.05
                           23
                           566.0
     

     
     
174055
                           gb|AAN66660.1|AE016294_2
                           (AE016777) cumB protein [Pseudomonas putida KT2440]
                           182
                           56.59
                           67.03
                           37
                           536.0
     

     
     
174056
                           gb|AAD24212.1|AF086638_2
                           (AF086638) CumB [Pseudomonas putida GB-1]
                           182
                           55.49
                           65.93
                           37
                           524.0
     

     






      

          
GC ORFID: 47093How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3767Glimmer Score: 

          
Start: 3620046Stop: 3619498

          
Length: 549


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3767 translation of PA3767Homolog Bit Score 361.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4546 (ORF: BLASTX 218.0), t_PA3767 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCGGGTGACTAAGCTGATCAGCAACGGCAAGGGCTACCCGACGGTAAAAGGTGTGCGTCCGATCATCGAT 
CGCAGCCGGGACCCGCATTTCATGCGCGAGGCCCTGGCAGAGGCGGAAAAGGCCGCGGCCCTCGGCGAAGTG 
CCGGTGGGCGCGGTCCTGGTGCGCGAGGGCGAGATCATCGGGCGGGGCTTCAACCGGCCGATCAGCAGCCAC 
GATCCCAGTGCCCACGCCGAAATGCTGGCGATCCGCATGGCAGCGGCGGAGGCGGGCAACTACCGGCTGCCA 
GGCAGCACCCTGTATGTGACCCTGGAACCCTGCAGCATGTGTTCCGGACTGCTGGTGCACGCACGCATCCAG 
CGCCTGGTGTACGGCACGGTCGAGCCCAAGTCGGGCGCAGTGGAAAGCCGTGGGCGATTCTTCGAGCAGGAG 
CATCTCAACCATAGGGTCATGGTCGAGGGCGGCGTGCTGGCGGAAGAATGCAGCCAGGCGCTCTCGGCGTTC 
TTCCGCGCGCGGCGCGAAGCGGCGAAGAAGCCTCGCGAAGACTGA