ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4090

TrivialName: PA14_19210

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_19210

PAO1 Ortholog Locus: PA3469

Sequence Length: 543

Protein Length: 180

Start: 1659200

Stop: 1658658

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG06857.1|AE004768_2 (AE004768) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 172/180 (95%), Positives = 174/180 (96%)

Sequence:

ATGAAACCGCACCTGACCTACTACGTCGCCGCCAGCCTGGACGGTTTCATCGCCCGCCCCGACGGCAGCGTC
GACTGGCTCGACCGTTTCGCCGAGGGCGGCAACGACCACGGCTACAAGAGCTTCTACCAGGGCATCGACGGC
CTGCTGATGGGCCGCGGCACCTACGATATCGTGCGCGGCTTCGGCGACTGGCCGTATCCGGGCAAACCCTGC
CAGGTACTCACCCGCAACCCGCAGGAAAGCGCAGCGGAAGGCGTCGAGTTGCGCCACGTCACACCCCAGGAA
GGCCTCGCGCGCCTCGGCGAACAGGGCTGCCGGCGGATCTGGCTGGCCGGCGGCGGCAGCCTGGCCGGTAGT
TGCCTGGCGGCCGGGCTGCTCGACGAGGTGATCGTCAGCGTCATTCCGCAGCTGCTCGGCGCCGGCATCCCG
CTGTTCGCCGGCGGCCGCGAGCGGCGCCTGCAACTGCTGGAACAACATGGCTACAACAGCGGCATCGTACAG
ATGCGCTACCAGGTGATCGCCGAGGACGACCCGCAATGA

Translation:

MKPHLTYYVAASLDGFIARPDGSVDWLDRFAEGGNDHGYKSFYQGIDGLLMGRGTYDIVRGFGDWPYPGKPC
QVLTRNPQESAAEGVELRHVTPQEGLARLGEQGCRRIWLAGGGSLAGSCLAAGLLDEVIVSVIPQLLGAGIP
LFAGGRERRLQLLEQHGYNSGIVQMRYQVIAEDDPQ*

AnnotationID:4097 GeneID:4090

AnnotatorUID: diggins

Modification Date/Time: 2005-04-19 10:10:42

Gene Name:

Confidence Code: 3

GeneProduct: putative dihydrofolate reductase

Cell Localization: ()

Synonyms: PA3469

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (4) Biosynthesis of cofactors, prosthetic groups and carriers

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: pfam01872,COG0262

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAO07942.1|AE016811_183 (AE016811) Dihydrofolate reductase [Vibrio vulnificus CMCP6]
          Length = 177

 Score =  105 bits (262), Expect = 1e-22
 Identities = 63/145 (43%), Positives = 92/145 (63%), Gaps = 9/145 (6%)

Structural Features:

pfam01872, RibD_C, RibD C-terminal domain. 
CD-Length = 196 residues,  99.5% aligned
Score = 76.5 bits (188), Expect = 2e-15
Identities = 55/203 (27%), Positives = 85/203 (41%), Gaps = 46/203 (22%)

COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism]
CD-Length = 167 residues,  97.6% aligned
Score =  124 bits (313), Expect = 6e-30
Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 9/171 (5%)

Genomic Context:

Comment:

ReferenceID:8182

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:25325

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32089

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 4090_cdd.html

URL:

Homologs By Global Alignment

Gene ID:4090

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6333 PA3469_tr translation of PA3469 180 95.55 96.66 0 927.0

174044 gb|AAG06857.1|AE004768_2 (AE004768) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 180 95.55 96.66 0 927.0

174045 gb|AAR34946.1| (AE017212) ribD domain protein [Geobacter sulfurreducens PCA] 181 45.85 55.24 7 406.0

174049 emb|CAB15750.1| (Z99123) ywjB [Bacillus subtilis subsp. subtilis str. 168] 189 39.68 53.43 24 300.0

174048 emb|CAA89863.1| (Z49782) Unknown [Bacillus subtilis] 189 39.68 53.43 24 300.0

GC ORFID: `47092`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA3469`	Glimmer Score:
Start: `3294732`	Stop: `3295274`
Length: `543`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA3469 translation of PA3469`	Homolog Bit Score `361.0`
Other Homologs: `t_PA3469 (ORF: GLIMMER)`
GC ORF Sequence
ATGAAACCGCACCTGACCTACTACGTCGCCGCCAGCCTGGACGGTTTCATCGCCCGCCCCGACGGCAGCGTC GACTGGCTCGACCGTTTCGCCGAGGGCGGCAACGACCACGGCTACAAGAGCTTCTACCAGGGCATCGACGGC CTGCTGATGGGCCGCGGCACCTACGATATCGTGCGCGGCTTCGGCGACTGGCCGTATCCGGGCAAACCCTGC CAGGTACTCACCCGCAACCCGCAGGAAAGCGCAGCGGAAGGCGTCGAGTTGCGCCACGTCACACCCCAGGAA GGCCTCGCGCGCCTCGGCGAACAGGGCTGCCGGCGGATCTGGCTGGCCGGCGGCGGCAGCCTGGCCGGTAGT TGCCTGGCGGCCGGGCTGCTCGACGAGGTGATCGTCAGCGTCATTCCGCAGCTGCTCGGCGCCGGCATCCCG CTGTTCGCCGGCGGCCGCGAGCGGCGCCTGCAACTGCTGGAACAACATGGCTACAACAGCGGCATCGTACAG ATGCGCTACCAGGTGATCGCCGAGGACGACCCGCAATGA