ViewGene

Locus Name:
GeneID:
Location:

GeneID:409
TrivialName: PA14_60310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60310
PAO1 Ortholog Locus:
Sequence Length:3477
Protein Length:1158
Start: 5373154
Stop: 5376630
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP81276.1| (AY273871) PilY1 [Pseudomonas aeruginosa]
Identities = 1158/1158 (100%), Positives = 1158/1158 (100%)
Sequence:
ATGATCCACCAGATTACCCGCGCAGGAAAAAGCCTGCTGGCTGCAGGTTGCACCCTGAGCATCCTGTTCGCC
TCTGACAGTTATGCCGCCACGGCCCTGAATGTCAGCCAGCAACCCCTGTTCCTAACCCAGGGCGTTGCTCCC
AACCTGCTGTTCACTCTAGATGACTCAGGCAGTATGGCCTGGGCTTACGTGCCCGACGGTATTAGCGGGAAT
AGCGGCAGAGCGGGACGTTCCAGCGATTACAACGCACTGTACTACAACCCCGATTATGCTTACCAAGTGCCC
AAGAAATTGACACTGTCAGGCGATCAGATCATCGTTTCCGACTATCCAGTGCCACGCTTCACAGCAGCCTGG
CAGGATGGCTACGCCCAAGGCTCCACCACCAACCTGAGCAATAACTATCGCCCTCAATGGGGAACCGGCTGG
CTTGGTTGCATCGATAGCAGCTGCAATACCGGGAGAGCTTATTACTATACTTATAAGGTAAGCGCTAGCTGC
CCTGCACAGCCGGTGAGCAGCTCCAACTCCTGTTATACCTACAATGCTCTTCCTACCAGTCAGGAAAGCAAC
TTTGCGATATGGTACTCCTACTATCGCAACCGCATCCTGGCCACAAAGACCGCTGCCAACCTGGCCTTTTAC
AGCCTGCCGGAAAACGTGCGTCTCACTTGGGGGGCCCTGAACACCTGTAGCATCGGCGCCAACAGCAGAAGC
TGCCAAAACAATGCCCTGCTCCAATTCAACAAGCAGCACAAAATCAATTTCTTCAATTGGCTGGCGAACAGC
CCGGCCAGCGGCGGTACTCCTCTGCATGCGGCTCTTGACCGAGCCGGACGCTTCTTGCAAACCAACGGCACA
GCTTATACCACCGAAGACGGAAAGACATATTCCTGCCGGGCCAGCTATCACATCATGATGACCGACGGTATC
TGGAACGGTCGGAACGTCACCCCCGGCAATCTCGACAACCAGAACCAGACCTTTCCTGATAGCACCCTCTAT
AGGCCACAGCCCCCTTATGCCGACAGCAATGCCAGCTCATTGGCTGACCTGGCTTTCAAATACTGGACCACA
GACTTACGTCCCAGCATCGACAATGACCTGAAGCCTTTCATGGCCTACAAGAGTGGGGACGATTCCAAGGAT
TACTGGGACCCTCGCAACAACCCAGCCACTTGGCAACACATGGTCAACTTTACCGTTGGCCTAGGTCTTTCC
TATTCGCTCACATTGAACTCTGCACCAACTTGGACAGGCAGCACCTTTGGCAACTACGAGGAGTTGATGGCT
GGAAGCAAGGCTTGGCCCAGCGTCGATAACGACGCCGCACCCGGTAACGTCTACGACCTCTGGCATGCAGCT
ATCAACTCTCGTGGAGACTTCTTTAGCGCGGAATCACCGGACTCTCTGGTTCAGGCTTTCAATAAGATCCTG
ACACGGATTTCCGAGCGCAACACCTCCTCCTCCAAACCAGCAATGACTTCCGCGCTGCAGGATGACGGAACC
GGCGACAAGCTGATCCGCTACAGCTACCAGTCCAGCTTTGCCAGTGACAAGAACTGGGCGGGCGACCTTATA
CGTTACAAGGTGGAGTCGACTTCCACCGGTTCGACCAAAACCCAGGAATGGAGCGCCGGCGCACTGCTGGAC
AACCGAGCTCCCGCTACCCGTAATATTTACATCGCCAGCAATAGCGGAACCAACCGCCTTAAGCCTTTCACA
TGGAGCAATATTGAGGGAAGTCAGTTAGCCACTTGGCTGAACCGCAACCCGGACAAGGACAATCAGGCCGAC
ACCAAAGGAGCACAGCGGGTCGACTTCATCCGTGGCCAGCAGAATATGGATGGATTCCGGCAACGACAGGCG
GTGTTAGGGGACATCGTGCACTCGTCTCCAGCCGTGGTCGGACCGGCCCAATACCTCACTTATCTGGCCAAC
CCCATCGAACCCAGCGGCGACTACGGCACATTCAAGACAGAGGCAGACCAGCGCAGCCCTAGAGTTTATGTT
GGATCCAACGATGGCATGTTGCATGGTTTCAACATCAAAACCGGCGTGGAAGAGTTCGCTTTCATCCCTACA
GCAGTATTCGAAAAGCTTAACAAGCTTACCGGCATCAGCTACCAGGGCGGTGCCCACCAATATTTCGTCGAC
GCTACACCGGTCGTCAGCGATGCCTTTTTCGATGGAGCTTGGCACACTGTTCTGATCGGAACGCTTGGTGCT
GGAGGTCGCGGCCTGTTCGCACTCGATGTAACCAAGCCGGACGATGTCAAGCTGCTTTGGGAATACGATAGC
AGTACCGACTCGGACCTTGGTTACACCTTCTCCAAACCTACCGTAGCCAGACTGCACAGCGGACAATGGGCA
GTAGTTACCGGCAACGGCTATGGAAGCGATAATGACAAGGCAGCTTTACTGCTGATTGATTTGAAAAAGGGA
ACGCTGATCAAGAAGCTGGAAGTCCAAAGCGAGCGCGGAATAGCCAATGGCCTATCGACGCCTCGCCTGGCT
GATAACAACAGCGATGGCATTGCTGACTACGCCTATGCTGGCGATCTGCAGGGAAATATCTGGCGCTTCGAT
TTGATCGGCAATACCCGCAACGACGACCCAGACACAAATACCTCTATCAATCCCTTCAAGCCCGGAGATGTA
GATCCTTCTGCTTTCAGAGTATCGTTCAGCGGCGCCCCGCTTTTCCGTGCTCGCGCCGACAACAATACTCGT
CAGCCCATCACGGCTCCGCCTACCTTGGTACGCCATCCTAGCCGTAAGGGCTACATCGTCATCGTAGGTACA
GGAAAATACTTCGAGGACGATGACGCTCAGGCCGATACCAGCCGAGCCATGACGCTCTATGGTATCTGGGAT
CGCCAGACCAAGGGCGAAAGCGCAAACAGTACCCCAACCATCGACCGCAACGCCCTCACAGCCCAAACCATG
ACAACAGAGGCGAACTCCACATTCGGTAGCGTGAACAGGAATATTCGGCTTATTAGCCAAAACCCGGTGAAG
TGGTACAAAGACGGAGCAACCGGTACCGCGAACTCGGATGTGGCTAGCTATGGCTGGCGACTGAATCTGGAG
GTCAATAGCAGCAAGAAAGGCGAAATGATGATCGAAGATATGTTCGCTGCCGGCCAAGTGCTTCTATTGCAG
ACCTTGACACCGAACGACGACCCTTGTGACAGCGGCTCTACCAGCTGGACCTACGGCCTCAATCCATATACT
GGCGGACGTACCAGTTTCACCGTCTTCGATCTCAAACGTGCGGGTATAGTGGACTCTGGCTCGGATTACAAC
GGCTCGGTCGTATCCGCCTTCCAACAGGATGGACTAGGTGGCTTGGCCATTACCCAGAACGAACAGCGTCAA
TCCGAGGCTTGCACTGGTGATGAGTGCATCATCTTCAACCCCAGCGACAAGAGTAACGGACGACAAACCTGG
CGGGTCGTCGAGGAGAAATGA
Translation:
MIHQITRAGKSLLAAGCTLSILFASDSYAATALNVSQQPLFLTQGVAPNLLFTLDDSGSMAWAYVPDGISGN
SGRAGRSSDYNALYYNPDYAYQVPKKLTLSGDQIIVSDYPVPRFTAAWQDGYAQGSTTNLSNNYRPQWGTGW
LGCIDSSCNTGRAYYYTYKVSASCPAQPVSSSNSCYTYNALPTSQESNFAIWYSYYRNRILATKTAANLAFY
SLPENVRLTWGALNTCSIGANSRSCQNNALLQFNKQHKINFFNWLANSPASGGTPLHAALDRAGRFLQTNGT
AYTTEDGKTYSCRASYHIMMTDGIWNGRNVTPGNLDNQNQTFPDSTLYRPQPPYADSNASSLADLAFKYWTT
DLRPSIDNDLKPFMAYKSGDDSKDYWDPRNNPATWQHMVNFTVGLGLSYSLTLNSAPTWTGSTFGNYEELMA
GSKAWPSVDNDAAPGNVYDLWHAAINSRGDFFSAESPDSLVQAFNKILTRISERNTSSSKPAMTSALQDDGT
GDKLIRYSYQSSFASDKNWAGDLIRYKVESTSTGSTKTQEWSAGALLDNRAPATRNIYIASNSGTNRLKPFT
WSNIEGSQLATWLNRNPDKDNQADTKGAQRVDFIRGQQNMDGFRQRQAVLGDIVHSSPAVVGPAQYLTYLAN
PIEPSGDYGTFKTEADQRSPRVYVGSNDGMLHGFNIKTGVEEFAFIPTAVFEKLNKLTGISYQGGAHQYFVD
ATPVVSDAFFDGAWHTVLIGTLGAGGRGLFALDVTKPDDVKLLWEYDSSTDSDLGYTFSKPTVARLHSGQWA
VVTGNGYGSDNDKAALLLIDLKKGTLIKKLEVQSERGIANGLSTPRLADNNSDGIADYAYAGDLQGNIWRFD
LIGNTRNDDPDTNTSINPFKPGDVDPSAFRVSFSGAPLFRARADNNTRQPITAPPTLVRHPSRKGYIVIVGT
GKYFEDDDAQADTSRAMTLYGIWDRQTKGESANSTPTIDRNALTAQTMTTEANSTFGSVNRNIRLISQNPVK
WYKDGATGTANSDVASYGWRLNLEVNSSKKGEMMIEDMFAAGQVLLLQTLTPNDDPCDSGSTSWTYGLNPYT
GGRTSFTVFDLKRAGIVDSGSDYNGSVVSAFQQDGLGGLAITQNEQRQSEACTGDECIIFNPSDKSNGRQTW
RVVEEK*
AnnotationID:418GeneID:409
AnnotatorUID: danlee
Modification Date/Time: 2005-10-05 17:05:38
Gene Name:pilY1
Confidence Code:2
GeneProduct:type 4 fimbrial biogenesis protein PilY1
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3419
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|11352777|pir||D83076  type 4 fimbrial biogenesis protein PilY1 PA4554 
[Pseudomonas aeruginosa PAO1]
     Length=1161
     Score = 1263 bits (3267),  Expect = 0.0
     Identities = 649/1185 (54%), Positives = 829/1185 (69%), Gaps = 55/1185 (4%)

gi|30180744|emb|CAD85658.1|  putative type 4 fimbrial biogenesis protein PilY1 [Nitrosomonas europaea ATCC 19718]
     Length=1143
     Score =  500 bits (1287),  Expect = 1e-139
     Identities = 389/1182 (32%), Positives = 576/1182 (48%), Gaps = 206/1182 (17%)
Structural Features:
COG3419, PilY1, Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and 
secretion / Intracellular trafficking and secretion].
             CD-Length = 1036 residues,  98.3% aligned
             Score =  515 bits (1327), Expect = 1e-146

pfam05567, Neisseria_PilC, Neisseria PilC protein. 
             CD-Length = 1036 residues, only  36.4% aligned
             Score =  112 bits (281), Expect = 2e-25
Genomic Context:
PA14 GeneIDs 5422 to 5476 (Trivial Names PA14_60280 to PA14_60320) replace PAO1 genes 
PA4549 through PA4556 required for type 4 fimbrial biogenesis.  PA14 ORFs corresponding 
to fimT (PA4549), pilV (PA4551), and pilY2 (PA4555) are absent.
Comment:
ReferenceID:821
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17963
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31657
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:409_cdd.html
URL:
ReferenceID:33010
Author/Investigator(s): Alm RA, Hallinan JP, Watson AA, Mattick JS.
Title: Fimbrial biogenesis genes of Pseudomonas aeruginosa: pilW and pilX increase the similarity of type 4 fimbriae to the GSP protein-secretion systems and pilY1 encodes a gonococcal PilC homologue.
PubMed: 8899718
MedLine:
Source:
Mol Microbiol. 1996 Oct;22(1):161-73.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8899718
Homologs By Global Alignment
Gene ID:409

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
31565 gb|AAP81276.1| (AY273871) PilY1 [Pseudomonas aeruginosa] 1170 98.97 98.97 12 6158.0
693 PA4554_tr translation of PA4554 1189 54.66 69.80 59 3328.0
31566 gb|AAG07942.1|AE004869_6 (AE004869) type 4 fimbrial biogenesis protein PilY1 [Pseudomonas aeruginosa PAO1] 1189 54.66 69.80 59 3328.0
31567 gb|AAA93502.1| (L76605) pilY1 gene product [Pseudomonas aeruginosa] 1230 49.75 63.98 141 2994.0
GC ORFID: 43411How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4554Glimmer Score:
Start: 4636833Stop: 4640309
Length: 3477
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4554 translation of PA4554Homolog Bit Score 1263.0
Other Homologs: t_PA4554 (ORF: GLIMMER)
GC ORF Sequence
ATGATCCACCAGATTACCCGCGCAGGAAAAAGCCTGCTGGCTGCAGGTTGCACCCTGAGCATCCTGTTCGCC
TCTGACAGTTATGCCGCCACGGCCCTGAATGTCAGCCAGCAACCCCTGTTCCTAACCCAGGGCGTTGCTCCC
AACCTGCTGTTCACTCTAGATGACTCAGGCAGTATGGCCTGGGCTTACGTGCCCGACGGTATTAGCGGGAAT
AGCGGCAGAGCGGGACGTTCCAGCGATTACAACGCACTGTACTACAACCCCGATTATGCTTACCAAGTGCCC
AAGAAATTGACACTGTCAGGCGATCAGATCATCGTTTCCGACTATCCAGTGCCACGCTTCACAGCAGCCTGG
CAGGATGGCTACGCCCAAGGCTCCACCACCAACCTGAGCAATAACTATCGCCCTCAATGGGGAACCGGCTGG
CTTGGTTGCATCGATAGCAGCTGCAATACCGGGAGAGCTTATTACTATACTTATAAGGTAAGCGCTAGCTGC
CCTGCACAGCCGGTGAGCAGCTCCAACTCCTGTTATACCTACAATGCTCTTCCTACCAGTCAGGAAAGCAAC
TTTGCGATATGGTACTCCTACTATCGCAACCGCATCCTGGCCACAAAGACCGCTGCCAACCTGGCCTTTTAC
AGCCTGCCGGAAAACGTGCGTCTCACTTGGGGGGCCCTGAACACCTGTAGCATCGGCGCCAACAGCAGAAGC
TGCCAAAACAATGCCCTGCTCCAATTCAACAAGCAGCACAAAATCAATTTCTTCAATTGGCTGGCGAACAGC
CCGGCCAGCGGCGGTACTCCTCTGCATGCGGCTCTTGACCGAGCCGGACGCTTCTTGCAAACCAACGGCACA
GCTTATACCACCGAAGACGGAAAGACATATTCCTGCCGGGCCAGCTATCACATCATGATGACCGACGGTATC
TGGAACGGTCGGAACGTCACCCCCGGCAATCTCGACAACCAGAACCAGACCTTTCCTGATAGCACCCTCTAT
AGGCCACAGCCCCCTTATGCCGACAGCAATGCCAGCTCATTGGCTGACCTGGCTTTCAAATACTGGACCACA
GACTTACGTCCCAGCATCGACAATGACCTGAAGCCTTTCATGGCCTACAAGAGTGGGGACGATTCCAAGGAT
TACTGGGACCCTCGCAACAACCCAGCCACTTGGCAACACATGGTCAACTTTACCGTTGGCCTAGGTCTTTCC
TATTCGCTCACATTGAACTCTGCACCAACTTGGACAGGCAGCACCTTTGGCAACTACGAGGAGTTGATGGCT
GGAAGCAAGGCTTGGCCCAGCGTCGATAACGACGCCGCACCCGGTAACGTCTACGACCTCTGGCATGCAGCT
ATCAACTCTCGTGGAGACTTCTTTAGCGCGGAATCACCGGACTCTCTGGTTCAGGCTTTCAATAAGATCCTG
ACACGGATTTCCGAGCGCAACACCTCCTCCTCCAAACCAGCAATGACTTCCGCGCTGCAGGATGACGGAACC
GGCGACAAGCTGATCCGCTACAGCTACCAGTCCAGCTTTGCCAGTGACAAGAACTGGGCGGGCGACCTTATA
CGTTACAAGGTGGAGTCGACTTCCACCGGTTCGACCAAAACCCAGGAATGGAGCGCCGGCGCACTGCTGGAC
AACCGAGCTCCCGCTACCCGTAATATTTACATCGCCAGCAATAGCGGAACCAACCGCCTTAAGCCTTTCACA
TGGAGCAATATTGAGGGAAGTCAGTTAGCCACTTGGCTGAACCGCAACCCGGACAAGGACAATCAGGCCGAC
ACCAAAGGAGCACAGCGGGTCGACTTCATCCGTGGCCAGCAGAATATGGATGGATTCCGGCAACGACAGGCG
GTGTTAGGGGACATCGTGCACTCGTCTCCAGCCGTGGTCGGACCGGCCCAATACCTCACTTATCTGGCCAAC
CCCATCGAACCCAGCGGCGACTACGGCACATTCAAGACAGAGGCAGACCAGCGCAGCCCTAGAGTTTATGTT
GGATCCAACGATGGCATGTTGCATGGTTTCAACATCAAAACCGGCGTGGAAGAGTTCGCTTTCATCCCTACA
GCAGTATTCGAAAAGCTTAACAAGCTTACCGGCATCAGCTACCAGGGCGGTGCCCACCAATATTTCGTCGAC
GCTACACCGGTCGTCAGCGATGCCTTTTTCGATGGAGCTTGGCACACTGTTCTGATCGGAACGCTTGGTGCT
GGAGGTCGCGGCCTGTTCGCACTCGATGTAACCAAGCCGGACGATGTCAAGCTGCTTTGGGAATACGATAGC
AGTACCGACTCGGACCTTGGTTACACCTTCTCCAAACCTACCGTAGCCAGACTGCACAGCGGACAATGGGCA
GTAGTTACCGGCAACGGCTATGGAAGCGATAATGACAAGGCAGCTTTACTGCTGATTGATTTGAAAAAGGGA
ACGCTGATCAAGAAGCTGGAAGTCCAAAGCGAGCGCGGAATAGCCAATGGCCTATCGACGCCTCGCCTGGCT
GATAACAACAGCGATGGCATTGCTGACTACGCCTATGCTGGCGATCTGCAGGGAAATATCTGGCGCTTCGAT
TTGATCGGCAATACCCGCAACGACGACCCAGACACAAATACCTCTATCAATCCCTTCAAGCCCGGAGATGTA
GATCCTTCTGCTTTCAGAGTATCGTTCAGCGGCGCCCCGCTTTTCCGTGCTCGCGCCGACAACAATACTCGT
CAGCCCATCACGGCTCCGCCTACCTTGGTACGCCATCCTAGCCGTAAGGGCTACATCGTCATCGTAGGTACA
GGAAAATACTTCGAGGACGATGACGCTCAGGCCGATACCAGCCGAGCCATGACGCTCTATGGTATCTGGGAT
CGCCAGACCAAGGGCGAAAGCGCAAACAGTACCCCAACCATCGACCGCAACGCCCTCACAGCCCAAACCATG
ACAACAGAGGCGAACTCCACATTCGGTAGCGTGAACAGGAATATTCGGCTTATTAGCCAAAACCCGGTGAAG
TGGTACAAAGACGGAGCAACCGGTACCGCGAACTCGGATGTGGCTAGCTATGGCTGGCGACTGAATCTGGAG
GTCAATAGCAGCAAGAAAGGCGAAATGATGATCGAAGATATGTTCGCTGCCGGCCAAGTGCTTCTATTGCAG
ACCTTGACACCGAACGACGACCCTTGTGACAGCGGCTCTACCAGCTGGACCTACGGCCTCAATCCATATACT
GGCGGACGTACCAGTTTCACCGTCTTCGATCTCAAACGTGCGGGTATAGTGGACTCTGGCTCGGATTACAAC
GGCTCGGTCGTATCCGCCTTCCAACAGGATGGACTAGGTGGCTTGGCCATTACCCAGAACGAACAGCGTCAA
TCCGAGGCTTGCACTGGTGATGAGTGCATCATCTTCAACCCCAGCGACAAGAGTAACGGACGACAAACCTGG
CGGGTCGTCGAGGAGAAATGA