Modification Date/Time: 2006-04-06 13:01:23
Missense Discrepancy: FALSE
Comments:Homology: gb|AAP81276.1| (AY273871) PilY1 [Pseudomonas aeruginosa]
Identities = 1158/1158 (100%), Positives = 1158/1158 (100%)
Sequence:
ATGATCCACCAGATTACCCGCGCAGGAAAAAGCCTGCTGGCTGCAGGTTGCACCCTGAGCATCCTGTTCGCC
TCTGACAGTTATGCCGCCACGGCCCTGAATGTCAGCCAGCAACCCCTGTTCCTAACCCAGGGCGTTGCTCCC
AACCTGCTGTTCACTCTAGATGACTCAGGCAGTATGGCCTGGGCTTACGTGCCCGACGGTATTAGCGGGAAT
AGCGGCAGAGCGGGACGTTCCAGCGATTACAACGCACTGTACTACAACCCCGATTATGCTTACCAAGTGCCC
AAGAAATTGACACTGTCAGGCGATCAGATCATCGTTTCCGACTATCCAGTGCCACGCTTCACAGCAGCCTGG
CAGGATGGCTACGCCCAAGGCTCCACCACCAACCTGAGCAATAACTATCGCCCTCAATGGGGAACCGGCTGG
CTTGGTTGCATCGATAGCAGCTGCAATACCGGGAGAGCTTATTACTATACTTATAAGGTAAGCGCTAGCTGC
CCTGCACAGCCGGTGAGCAGCTCCAACTCCTGTTATACCTACAATGCTCTTCCTACCAGTCAGGAAAGCAAC
TTTGCGATATGGTACTCCTACTATCGCAACCGCATCCTGGCCACAAAGACCGCTGCCAACCTGGCCTTTTAC
AGCCTGCCGGAAAACGTGCGTCTCACTTGGGGGGCCCTGAACACCTGTAGCATCGGCGCCAACAGCAGAAGC
TGCCAAAACAATGCCCTGCTCCAATTCAACAAGCAGCACAAAATCAATTTCTTCAATTGGCTGGCGAACAGC
CCGGCCAGCGGCGGTACTCCTCTGCATGCGGCTCTTGACCGAGCCGGACGCTTCTTGCAAACCAACGGCACA
GCTTATACCACCGAAGACGGAAAGACATATTCCTGCCGGGCCAGCTATCACATCATGATGACCGACGGTATC
TGGAACGGTCGGAACGTCACCCCCGGCAATCTCGACAACCAGAACCAGACCTTTCCTGATAGCACCCTCTAT
AGGCCACAGCCCCCTTATGCCGACAGCAATGCCAGCTCATTGGCTGACCTGGCTTTCAAATACTGGACCACA
GACTTACGTCCCAGCATCGACAATGACCTGAAGCCTTTCATGGCCTACAAGAGTGGGGACGATTCCAAGGAT
TACTGGGACCCTCGCAACAACCCAGCCACTTGGCAACACATGGTCAACTTTACCGTTGGCCTAGGTCTTTCC
TATTCGCTCACATTGAACTCTGCACCAACTTGGACAGGCAGCACCTTTGGCAACTACGAGGAGTTGATGGCT
GGAAGCAAGGCTTGGCCCAGCGTCGATAACGACGCCGCACCCGGTAACGTCTACGACCTCTGGCATGCAGCT
ATCAACTCTCGTGGAGACTTCTTTAGCGCGGAATCACCGGACTCTCTGGTTCAGGCTTTCAATAAGATCCTG
ACACGGATTTCCGAGCGCAACACCTCCTCCTCCAAACCAGCAATGACTTCCGCGCTGCAGGATGACGGAACC
GGCGACAAGCTGATCCGCTACAGCTACCAGTCCAGCTTTGCCAGTGACAAGAACTGGGCGGGCGACCTTATA
CGTTACAAGGTGGAGTCGACTTCCACCGGTTCGACCAAAACCCAGGAATGGAGCGCCGGCGCACTGCTGGAC
AACCGAGCTCCCGCTACCCGTAATATTTACATCGCCAGCAATAGCGGAACCAACCGCCTTAAGCCTTTCACA
TGGAGCAATATTGAGGGAAGTCAGTTAGCCACTTGGCTGAACCGCAACCCGGACAAGGACAATCAGGCCGAC
ACCAAAGGAGCACAGCGGGTCGACTTCATCCGTGGCCAGCAGAATATGGATGGATTCCGGCAACGACAGGCG
GTGTTAGGGGACATCGTGCACTCGTCTCCAGCCGTGGTCGGACCGGCCCAATACCTCACTTATCTGGCCAAC
CCCATCGAACCCAGCGGCGACTACGGCACATTCAAGACAGAGGCAGACCAGCGCAGCCCTAGAGTTTATGTT
GGATCCAACGATGGCATGTTGCATGGTTTCAACATCAAAACCGGCGTGGAAGAGTTCGCTTTCATCCCTACA
GCAGTATTCGAAAAGCTTAACAAGCTTACCGGCATCAGCTACCAGGGCGGTGCCCACCAATATTTCGTCGAC
GCTACACCGGTCGTCAGCGATGCCTTTTTCGATGGAGCTTGGCACACTGTTCTGATCGGAACGCTTGGTGCT
GGAGGTCGCGGCCTGTTCGCACTCGATGTAACCAAGCCGGACGATGTCAAGCTGCTTTGGGAATACGATAGC
AGTACCGACTCGGACCTTGGTTACACCTTCTCCAAACCTACCGTAGCCAGACTGCACAGCGGACAATGGGCA
GTAGTTACCGGCAACGGCTATGGAAGCGATAATGACAAGGCAGCTTTACTGCTGATTGATTTGAAAAAGGGA
ACGCTGATCAAGAAGCTGGAAGTCCAAAGCGAGCGCGGAATAGCCAATGGCCTATCGACGCCTCGCCTGGCT
GATAACAACAGCGATGGCATTGCTGACTACGCCTATGCTGGCGATCTGCAGGGAAATATCTGGCGCTTCGAT
TTGATCGGCAATACCCGCAACGACGACCCAGACACAAATACCTCTATCAATCCCTTCAAGCCCGGAGATGTA
GATCCTTCTGCTTTCAGAGTATCGTTCAGCGGCGCCCCGCTTTTCCGTGCTCGCGCCGACAACAATACTCGT
CAGCCCATCACGGCTCCGCCTACCTTGGTACGCCATCCTAGCCGTAAGGGCTACATCGTCATCGTAGGTACA
GGAAAATACTTCGAGGACGATGACGCTCAGGCCGATACCAGCCGAGCCATGACGCTCTATGGTATCTGGGAT
CGCCAGACCAAGGGCGAAAGCGCAAACAGTACCCCAACCATCGACCGCAACGCCCTCACAGCCCAAACCATG
ACAACAGAGGCGAACTCCACATTCGGTAGCGTGAACAGGAATATTCGGCTTATTAGCCAAAACCCGGTGAAG
TGGTACAAAGACGGAGCAACCGGTACCGCGAACTCGGATGTGGCTAGCTATGGCTGGCGACTGAATCTGGAG
GTCAATAGCAGCAAGAAAGGCGAAATGATGATCGAAGATATGTTCGCTGCCGGCCAAGTGCTTCTATTGCAG
ACCTTGACACCGAACGACGACCCTTGTGACAGCGGCTCTACCAGCTGGACCTACGGCCTCAATCCATATACT
GGCGGACGTACCAGTTTCACCGTCTTCGATCTCAAACGTGCGGGTATAGTGGACTCTGGCTCGGATTACAAC
GGCTCGGTCGTATCCGCCTTCCAACAGGATGGACTAGGTGGCTTGGCCATTACCCAGAACGAACAGCGTCAA
TCCGAGGCTTGCACTGGTGATGAGTGCATCATCTTCAACCCCAGCGACAAGAGTAACGGACGACAAACCTGG
CGGGTCGTCGAGGAGAAATGA
Translation:
MIHQITRAGKSLLAAGCTLSILFASDSYAATALNVSQQPLFLTQGVAPNLLFTLDDSGSMAWAYVPDGISGN
SGRAGRSSDYNALYYNPDYAYQVPKKLTLSGDQIIVSDYPVPRFTAAWQDGYAQGSTTNLSNNYRPQWGTGW
LGCIDSSCNTGRAYYYTYKVSASCPAQPVSSSNSCYTYNALPTSQESNFAIWYSYYRNRILATKTAANLAFY
SLPENVRLTWGALNTCSIGANSRSCQNNALLQFNKQHKINFFNWLANSPASGGTPLHAALDRAGRFLQTNGT
AYTTEDGKTYSCRASYHIMMTDGIWNGRNVTPGNLDNQNQTFPDSTLYRPQPPYADSNASSLADLAFKYWTT
DLRPSIDNDLKPFMAYKSGDDSKDYWDPRNNPATWQHMVNFTVGLGLSYSLTLNSAPTWTGSTFGNYEELMA
GSKAWPSVDNDAAPGNVYDLWHAAINSRGDFFSAESPDSLVQAFNKILTRISERNTSSSKPAMTSALQDDGT
GDKLIRYSYQSSFASDKNWAGDLIRYKVESTSTGSTKTQEWSAGALLDNRAPATRNIYIASNSGTNRLKPFT
WSNIEGSQLATWLNRNPDKDNQADTKGAQRVDFIRGQQNMDGFRQRQAVLGDIVHSSPAVVGPAQYLTYLAN
PIEPSGDYGTFKTEADQRSPRVYVGSNDGMLHGFNIKTGVEEFAFIPTAVFEKLNKLTGISYQGGAHQYFVD
ATPVVSDAFFDGAWHTVLIGTLGAGGRGLFALDVTKPDDVKLLWEYDSSTDSDLGYTFSKPTVARLHSGQWA
VVTGNGYGSDNDKAALLLIDLKKGTLIKKLEVQSERGIANGLSTPRLADNNSDGIADYAYAGDLQGNIWRFD
LIGNTRNDDPDTNTSINPFKPGDVDPSAFRVSFSGAPLFRARADNNTRQPITAPPTLVRHPSRKGYIVIVGT
GKYFEDDDAQADTSRAMTLYGIWDRQTKGESANSTPTIDRNALTAQTMTTEANSTFGSVNRNIRLISQNPVK
WYKDGATGTANSDVASYGWRLNLEVNSSKKGEMMIEDMFAAGQVLLLQTLTPNDDPCDSGSTSWTYGLNPYT
GGRTSFTVFDLKRAGIVDSGSDYNGSVVSAFQQDGLGGLAITQNEQRQSEACTGDECIIFNPSDKSNGRQTW
RVVEEK*
AnnotationID:418 GeneID:409
Modification Date/Time:
2005-10-05 17:05:38
GeneProduct: type 4 fimbrial biogenesis protein PilY1
Cell Localization Confidence Code: 5
Functional Category: (16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code: 5
Secondary Functional Category(ies):
Homology: gi|11352777| pir||D83076 type 4 fimbrial biogenesis protein PilY1 PA4554
[Pseudomonas aeruginosa PAO1]
Length=1161
Score = 1263 bits (3267), Expect = 0.0
Identities = 649/1185 (54%), Positives = 829/1185 (69%), Gaps = 55/1185 (4%)
gi|30180744| emb|CAD85658.1| putative type 4 fimbrial biogenesis protein PilY1 [Nitrosomonas europaea ATCC 19718]
Length=1143
Score = 500 bits (1287), Expect = 1e-139
Identities = 389/1182 (32%), Positives = 576/1182 (48%), Gaps = 206/1182 (17%)
Structural Features: COG3419 , PilY1, Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and
secretion / Intracellular trafficking and secretion].
CD-Length = 1036 residues, 98.3% aligned
Score = 515 bits (1327), Expect = 1e-146
pfam05567 , Neisseria_PilC, Neisseria PilC protein.
CD-Length = 1036 residues, only 36.4% aligned
Score = 112 bits (281), Expect = 2e-25
Genomic Context: PA14 GeneIDs 5422 to 5476 (Trivial Names PA14_60280 to PA14_60320) replace PAO1 genes
PA4549 through PA4556 required for type 4 fimbrial biogenesis. PA14 ORFs corresponding
to fimT (PA4549 ), pilV (PA4551 ), and pilY2 (PA4555 ) are absent.